Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02055 ATGGGTGATGTGAAGGACAAGGTTAAGGGCTTCATGAAACGCTTCAATAATCCCTTGTCCTCATCTTCTTCTGCCAGTTTCAAGGGCCAGGGAAGAGTGTTAGGATCCTCCTCTTCCGGGTCGACCACTTCTTTGCCTACCCGCCCATTGCAGAATCCCATTTCAAACCCGAATCTGGTCAAGCCCCCGGTAGCGAATTCAATTTCCGCGGCTCCGACCCGGCCACATCTCTCGATTAAATCGACCCCAGAACGTTCCCCGGCTGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAAATCTGGAAATGGGTATTCGTTAAATGTGTTCGAATGTCCGATTTGTGGCCAAAATTACAGGTCGGAAGAAGAGATTTCGGTGCACGTAGATAGCTGTGTCGATGATAATACAGCCAGGAGACCACCAGATCTGCTGCTCACAAATGATGCAGAATCCCCGAGTGAATTGGAGGGTTGTCTTGGCACTTTCTTGTCAGGTAAGCCCTCACAAGGTTCACTGAAAATTATTCTTACGCTTTTGAGGAACATAATTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAAGCAATTGGCGAGGCTGTCGGGGGAGTGGAATTGTTGGAATTTGTAGGTTTTAAATTGCAAGAACAAGATGGTGAAATGTGGGCAACCATGGAAGTTCCAACAGAGGAACAAATTAACATACTAAGCAAGGTAATAGATTCCATTGATCAACCAAAGCTTGATGAACAGGAAAAGAAAGGCAGCAGCACTGCATCCACTGCATCCACTGATCAACTGATTGAACCAAAGAAGGTTGACAGACAGACTCGGGTATTCTTTGCAATCCCTGAAAACGTTGCAGCAAACATCGAGCTACCAGACTCATTTTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTGTGATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTACCCAAATCATACAAGGAAAAGCAAGCCAAAGCTGCTCGGAGAAAGTACAATAGAACAGTGATCAGAATTCAGTTTCCTGATGGTGTGGTACTTCAAGGGGTTTTTTCTCCTTGGGAACCAACAAGTGCTCTCTATGAGTTTGTAAGCACAGCACTGAAAGAACCAAGTTTGGAGTTCGAGTTGATACAACCTGTCGGTGTTAAACGACGTGCAATCGCACACTTTCCAGCAGTAGGAGAGAAAGCTAAAACACTAGAAGATCTGGAGTTGGTTCCCTCAGCTCTTGTCAAGTTTAGACCCATTGAAACAGATGCTGTTGTGTTCACTGGTTTGTGTAATGAACTCCTTGAGATCATTGAACCACTCGTTAGCGGTTCAGCGGTAGCTCCACCTGCACAAGGTTAA 1410 44.75 MGDVKDKVKGFMKRFNNPLSSSSSASFKGQGRVLGSSSSGSTTSLPTRPLQNPISNPNLVKPPVANSISAAPTRPHLSIKSTPERSPADGFDPFDSFITSGKKSGNGYSLNVFECPICGQNYRSEEEISVHVDSCVDDNTARRPPDLLLTNDAESPSELEGCLGTFLSGKPSQGSLKIILTLLRNIIREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEQDGEMWATMEVPTEEQINILSKVIDSIDQPKLDEQEKKGSSTASTASTDQLIEPKKVDRQTRVFFAIPENVAANIELPDSFYKLSVEEVKREAVMRKQKIAESQLLVPKSYKEKQAKAARRKYNRTVIRIQFPDGVVLQGVFSPWEPTSALYEFVSTALKEPSLEFELIQPVGVKRRAIAHFPAVGEKAKTLEDLELVPSALVKFRPIETDAVVFTGLCNELLEIIEPLVSGSAVAPPAQG 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16702729 16705596 + Carg26061-RA Car04g02055 147480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02055 469 Pfam PUB domain 173 246 IPR018997 -
Car04g02055 469 Pfam UBX domain 350 431 IPR001012 GO:0005515
Car04g02055 469 MobiDBLite consensus disorder prediction 260 279 - -
Car04g02055 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 144 IPR013087 -
Car04g02055 469 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515
Car04g02055 469 MobiDBLite consensus disorder prediction 15 63 - -
Car04g02055 469 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02055 Car-Chr4:16702729 Car05g00614 Car-Chr5:3646567 3.60E-08 dispersed
Car15g00920 Car-Chr15:6041441 Car04g02055 Car-Chr4:16702729 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02055 K14011 - csv:101209321 733.021