Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02071 ATGGGAGATGGAATTGTGGACGCCGCTCTCGCCAGCCTCGGGAAAGGCTTTGATCTGACCTCCGATTTCAAGCTCAAGTACTGCAAAGGCAAACACAGGCTCGTCCTGCTCAACGAAGCGCAGAGACGAGATCTCATCGTTCCTGGCTTCGGCCCTGTTAAGGACGTCTCAATCGATATCAAATGCGATCGAGGCGATCGGACTCGCTACCAGTCTGATATCCTCAACTTCAATCAGATGTCGGAACTTTTCAATCGGAAATGTTCGATTCCAGGAAAAATTCCGTCCGGTTTCTTCAATGCGATTTTCGGATTCCAGAGCGGGTGTTGGGCGATGGATGCGGTGAACACCAAATGCTTAGGGCTTGACGGTTACTTCATCAGTCTCTTTAACGCTCACATTGATCGCTATCCGCTCCGCCTCTCCGATGAGGTCCGCGCCGCCGTGCCGTCCTCTTGGGATCCCCCCGCCATCGCAAGGTTCATTGAAAAGTATGGAACTCATATAATCGTTGGGCTTAGCATCGGCGGGCACGACGTGGTCCTAGTAAGGCAAGACAAGTCCTCCAATTTGGAAGCTTCAGAGCTGAAAAGCCACTTGGAAGAGCTGGGAGATCAGCTTTTCACCGGCGCCTGCACTTTCCCTCCTCCACATTCAAAACCCAAAGACCATCACAAAACCAAGCTACCACAGGCCTTCAACTTGTTTGATCCAAAGCTCGTGGCTTATGCCAACTTCTCTTCCGTCAGTGCAAAAGACGGAATAATAGTAATAACTTCAAAGAAAGGAGGGAGTCCAACAGCAAGTACCCATTGTGAGTGGCTCCCAACCGTGCTCGAATCGCCCGACGCAATTCATTTTCAGTTCATTCCGATCATCTCCCTTCTCGATCGCGTTCCTGGCAAGGGCTTTCTTTCCCATGCCATTAATCTTTATCTTCGATACAAGCCTCCTATAGCAGATTTGCAGTACTTTTTGGACTTTCAAGTGCACAAGATTTGGGCACCCATTCATAATGACCTTCCTTTAGGACCAACTCCCAACATTACTACTTCTCCTTATCTTCAACCCAACTTGATGGGTCCAAAACTTTATGTAAATACTACTCAGGTTACATCAGAGAACAAACCTGTCACAGGCTTGAGATTGTATCTAGAGGGCATCAAATCTAATAGGTTGGCAATTCATATCCAACATCTTCAAACTACTCCTATTCTTCTCCAAAACAATATCACTCAACATAACCCTCCCCTCTGGCATTCTTCGCTACACGTCGCCGATGATCGCTACGTCGAGCCTCTCAATCGCAACAAATTCTCTTACGTCTCTACAGCTCCGGTCACGTACGACCCCACCTGGGCCACTGCCACCCCAACCCCAGCAGCCTTCATAGTCACCGGAGCCCAACTCCACGTCGTGAAACATCACGACTCGAAGGCTGCTCTCCATCTCGGCCTCCTCTACTCCAAGGTCTCTAATTCCTACATCGTTCAAACGAATTGGGCACGCCACTCCTCCGACATCTCCCCTAAGTCTGGCATCTTCTCTGCCATCAGCACCTCCCTCTCTGGCGCCTCCTCTGCCCCCAAGGAGAAGCCACCCGACCCCGCTACCGTCATTGTCGATTCGGGAGTGTTTCACCACGGCCCACCGGTGCCACTTCAGGCTCAGAAGCTTGTGAAATTCGTAGAATTGTCGGAGATGCGTAAAGGGCCGCAGGACAGTCCGGGGCATTGGGTGGTGATCGGAGCTAGGCTGAACTTGGAAAATAGTAAGATTTGTTTGCATGTTAAGTTCGGTTTGGTGCATGTGGTTTCAGAAACTAGTGCTGATGAGCAATGA 1842 50.11 MGDGIVDAALASLGKGFDLTSDFKLKYCKGKHRLVLLNEAQRRDLIVPGFGPVKDVSIDIKCDRGDRTRYQSDILNFNQMSELFNRKCSIPGKIPSGFFNAIFGFQSGCWAMDAVNTKCLGLDGYFISLFNAHIDRYPLRLSDEVRAAVPSSWDPPAIARFIEKYGTHIIVGLSIGGHDVVLVRQDKSSNLEASELKSHLEELGDQLFTGACTFPPPHSKPKDHHKTKLPQAFNLFDPKLVAYANFSSVSAKDGIIVITSKKGGSPTASTHCEWLPTVLESPDAIHFQFIPIISLLDRVPGKGFLSHAINLYLRYKPPIADLQYFLDFQVHKIWAPIHNDLPLGPTPNITTSPYLQPNLMGPKLYVNTTQVTSENKPVTGLRLYLEGIKSNRLAIHIQHLQTTPILLQNNITQHNPPLWHSSLHVADDRYVEPLNRNKFSYVSTAPVTYDPTWATATPTPAAFIVTGAQLHVVKHHDSKAALHLGLLYSKVSNSYIVQTNWARHSSDISPKSGIFSAISTSLSGASSAPKEKPPDPATVIVDSGVFHHGPPVPLQAQKLVKFVELSEMRKGPQDSPGHWVVIGARLNLENSKICLHVKFGLVHVVSETSADEQ 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16849292 16853608 - Carg25245-RA Car04g02071 147496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02071 613 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 326 IPR020864 -
Car04g02071 613 Pfam MAC/Perforin domain 99 312 IPR020864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02071 - - - bhj:120067289 1041.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00839 Car-Chr4:4886065 Car04g02071 Car-Chr4:16849292 2.38E-173 dispersed
Car04g02071 Car-Chr4:16849292 Car16g00804 Car-Chr16:5263373 4.39E-169 dispersed
Car04g02071 Car-Chr4:16849292 Car08g00075 Car-Chr8:443420 1.75E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g515 Blo01g00773 Blo16g00758 Bda01g01794 Bda11g00189 Bpe13g01005 . . . . . . . . . . . Cpe01g01853 . . . . . . . . . . . . . . . . Cone6ag0353 . . Csa05g01977 . . . . . Bda11g00189 . Bpe02g01969 Bma01g00490 Bma06g01133 . Cmo04g02227 . Cma04g02134 . Car04g02071 . . . Bhi12g00955 . . . Hepe02g2611 . Lcy10g1378 Cla01g00646 Cam01g0674 Cec01g0665 Cco01g0693 Clacu01g0662 Cmu01g0635 Cre09g1870 Lsi09g00697 . Chy09g00812 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007498 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02071 Car_Chr04 FPKM 11.612613 14.376748 15.467618 12.584308 10.978819 15.097801 14.661798 28.410686 27.868259 28.102434