Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02075 ATGGCTCTCCCTCCCCTTGAGTGTATGTATGTCGTTGAAAGCAATCTTCGCGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCCAACCCTGTCCCTGTGCTTCGCTTCCTTTACGAGCTTTGCTGGACCATGGTTCGAGGTGAATTGCCGTTCCAGAAGTGTAAAACAGCATTGGATTCAGTAGAGTTCACGGACAAAATGTCTGCGGAGGAGTTAGGATCGAGTTTTGCTGATGTCATTACCCAATTGGCCCAAGATATCACATTACCCGGAGAGTATCGTGTTCGTCTTTTAAAATTGAGCACACTGCGAATAAGGGACTCTTATGATGGGGAAAGCACTACTACTTCTGAATGGAGACCACCATTCCAACCCAAACTTTATCTCCAAGATCAACAATTCAATGTTTGCTGTCAGTTGAAGAATCTATTGGAGGAATACAATGCTAAATGGCTGGTTGAATCTGCATTTGTTCCATTGAGGCTTTTTCAAGAACGGTGTGAGGAAGAATTTTTATGGGAGGCTGAAATGATAAAGATTAAGGCGCAGGAATTGAAAAGCAAAGAGGTCAGAGTAAATACTCGTCTTCTTTATCAGCAAACAAAGTTTAATCTTCTGCGTGAAGAAAGCGAGGGCTATGCCAAGTTGGTAACACTTCTTTGCCATGTCACTGACGCTTCAAATAACAATTTGCCGGGTTCAACAATTGGTATTATAAAGTCATTGATTGGGCATTTTGATTTGGACCCAAACCGTGTGTTTGACATTGTCTTGGAGTGTTTTGAACTTCAGCCAGAAAATAGTGTTTTTGTGGAGCTAATTCCAATATTTCCCAAGTCTCATGCTTCACAAATCCTTGGGTTCAAATTCCAATATTATCAGCGCATTGAAGTGAACTCGCCAGTGCCAGTTGGGCTTTATAAACTTACAGCTTTACTAGTGAAGGAAAAATTTATTGATCTGGATAGCATATATGCACATCTACTTCCTAAGGAGGAGGAGGCATTTGAGCATTATGAGTCCTTTTCTTCCAAACGACTTGATGAGGCTAACAGAATAGGTAAAATAAATCTTGCGGCAACGGGAAAAGATCTAATGGATGATGAGAAGCAAGGAGATGTAAGCATTGATCTTTTTGCTGCTCTTGATATGGAAAGTGAGGCAGTCAATGAAAGGTCTCCAGAGCTGGAAAATAATCAAACATTGGGCTTGCTTACAGGATTTCTTTCTGTGGGTGACTGGTATCATGCACATGTACTGTTTAATCGGCTTTTACCTCTCAATCCAGTGGAACACCTTCCAATCTGTAACTGTTTGTTTAGGTTCATTGAAGAATCGATCTCCTCTGCGTACTCTATTGTTCGTCAACATTATAATCAGAGCTTTGGGACCTCTTCAGGAGCTAGCATTGATACCAGGAATTTGCCGGTTGGTGGTTCTTTTATAGATCTTCCTAGGGAACTTTTTCAGATGCTTGCAGCTGCTGGACCTTATCTCTACCGTGATACAATTTTGCTGCATAAGGTCTGTAGGGTGCTGAGAGGTTATTATATGTCGGCAATTGAGTTTGTCAACAGTGTGGAAAGTGGTTCAAATCCTGAATTTGTTCTGCAAGCTGGTAGCCGGGTTCCTCATCTTCACTTGAAGGAAGCTAGATTGAAAATTGAGGAAGCTTTAGGAATGTGTATACTTCCTTCGTTACAGTTGATACCTGCCAATCCAGCTGTTGGTCAAGGAATATGGGAAGTAATGAATCTTCTTCCGTATGAGGTGCGGTATCGTTTATATGGTGAATGGGAGAAAGATGATGAGAAGATTCCAATGGTTTTGGCGGCAAGGCAAACCGCAAAGTTGGACACACGGAGGATTTTGAAGCGGTTGGCTAAGGAAAATTTGAAGCAATTGGGTAGGATGGTTGCAAAACTTGCTCATGCCAATCCGTTGACTGTCCTTCGCACTATATTACACCAGATTGAGGCATATAGGGATATGATTACTCCTGTAGTAGATGCATTCAAGTATCTGACTCAGCTTGAGTATGACATATTAGAATATGTTGTGATTGAACGTTTGGTGCAAGGAGGGCGTGATAAGTTGAAGGATGATGGCCTTAATCTGTCAGATTGGCTCCAGTCATTAGCTTCATTTTGGGGTCACCTGTGTAAGAAGTACCCATCTATGGAGCTAAGGGGTTTGTTTCAGTATCTCATTAATCAGTTGAAAAAAGGTCAAGGAATTGAACTTGTTCTCCTGCAGGAACTTGTTCAACAAATGGCCAATGTCCAATACACAGAAAACCTAACTGAGGAACAGTTGGATGCTATGGCAGGAAGTGAAACACTTCGTTATCAAGCAACTTCTTTTGGGGTTACTCGAAATAACAAGGCGTTGATCAAGTCAAGCAACAGACTGCGTGACTCCTTGCTTTCTAAGGATGAACCAAAATTGGCAGTCCCTCTCTTGCTACTTATTTCTCAACACCGATCAGTGGTTGTCATAAATGCAAATGCTCCTTATATTAAGATGGTCAGTGAACAATTTGATAGATGTCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTAGTGCAGTTACGCCTGCATCAGCTTATGCTCAGTTGATTCCCTCTCTCAATGAGCTTGCCCAGCTTTATCACCTAGATCCCGAGGTTGCTTTCCTGATATATCGACCGATAATGAGGTTATTTAAGTGTCAAGGTGGTTCAGATATCTTCTGGCCACTGGATGGCAATGATGCAAATGTTGCAAGCAATAATTCTGATTCGGAATCAGCAGAATGTTCTGCAGACGTTGTTTTGGAACTTGGTCCTTCACAGAAACCTGTGAGGTGGTCAGATCTCCTCGATGCTGTAAAGTCTATGTTACCTCCAAAAGCTTGGAATAGCTTGTCTCCAGATCTCTATACTACATTTTGGGGTCTCACGCTCTATGATCTTTATGTTCCTCAGAGTAGATATGAATCTGAAATTGCTAAGCAGCATTCTGCTCTTAAAGCTTTAGAAGAACTTTCTGATAACTCAAGTTCTGCAATCAATAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCTTGTCCAATGAACTAAATAAGCATGAAGAAAATGTTGCTTCCGTACGCAGACGACTTTCTCGTGAAAAGGATAAATGGTTGAGCTCCTGCCCTGATACTTTGAAAATTAACATGGAGTTCCTTCAGCGATGTATTTTTCCCCGCTGTACATTCAGTATGCCTGATGCTGTCTATTGTGCTATGTTTGTGCACACTCTTCATTCCCTTGGAACACCATTTTTTAATACAGTCAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGCACGGAATATGAAGCAGGCAGGCTTGGAAGGTTTTTATATGAGACACTAAAGATAGCTTATTATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTCGCTGTCTATTATAGGTATCCAAACAGTCAAAGAGTAACGTACGGCCAGTTCATCAAGGTTCATTGGAAGTGGAGTCAAAGAATTACACGATTACTCATACAATGCTTGGAATCTACAGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCCAACGTTTTTCCCGTCACTAGAAAGAGCGGAATCAACCTTGAGAAAAGGGTCGCTAAGATCAAAAGTGATGAAAGAGAAGATCTGAAGGTGTTAGCTACTGGTGTTGCCGCAGCTTTGGCTGCTAGAAAGCCTTCATGGGTTACAGATGAAGAATTTGGCATGGGTTATCTTGAATTAAAGACTGCACCTTCTCTTGCATCAAAGTCTTCAGCTAGTAATTTAGCTGCCACCCAAAGTAATTCCGTTTATTCTTCCCAAAATGAACATGGTGGAGGAAAGCCTACTGCCGTCCCAAGTTCAGATTCTGGAAATATGGCCAAAGACCATTCATTGAGGTCACGAACTTCTGACACGAGGACGGATAAAATAGATGGTTTTTCTGTTCCAAAATCTGAACTAGGGCATGGGAAACTCAAAGGCACTTCATTGAACGGACCAGATTCCCAGCCACTTGTGCCCTCAACTTCTGTGCATTCAGGATCGTTAAGAGTTGTGGAAGGTCCAAAACCAGGTGATGACTTAAGTAGGACTTCGAATGAAGGCTCATCAAAAGTTATTTTCAAGACCTCTTCTGAATCCGAGTTGAGAGTTTCAGCAAAACGAAACGCACCTGCTGGGATTCTTAGTAAAGCACCAAAACAAGATACCACGAAAGATGAGATTAGATCTGGAAAAGCTGCTAGCAAGAATCATGGGTCTTCCACAAGTGATCGGGAGCTTCCAATTCATGCAACAGACGGTGGTAGGCATGGAAGTTCTTATAAAACTTCTTCAGTTATGCCAAATGACTATACGCAAAGTTCATTAACTAGAGGCTTGTCCTCATCATTAAAAGCTTCAGATGGTCACGCTATTGAATTGAAGGCAGAGAGTGGAGTAGGGAGGACTTCTGATAGTAGGGCTTCGTCAGTAAAGGAAAATGGTACTGAAGCTCTTGAAGTTGCAAAATCCTCTTCTTCCAGACTTGCTCATTCTCCCAGACATGATAATTCTGCTAGTGGTTCTAGGTCTAGTGATAAACTGCCTAAAAGAGCTAGTCCTGCAGAAGAACCAGACAGACAAGGTAAACGTCGGAAAGGAGATGGTGAAAGTAGAGATGTAGATGGGGATTTTCGTAACCCTGACAAAGATAGATCCATAGACACACGATCTGTAGATGCTGATAAAATAGGAATGGATGAACAAAGTGGTTACAGAGGTTCAGATAAACCTCTGGAGAGAACAAAAGATAAGGTAAATGAAAGATACGATAGGGATTACAAAGATCGGGCAGAGCGTTCTGAGAAATCCCGTGGAGATGATCCATCAGTAGAAAAAACAAGAGACAGATCAATAGAAAGATATGGAAGAGAACGCTCGGTTGAGAAAGTGGAAAGAGTTTCTGATAGGTATCCTGACAAATCTAAGGATGAAAGAGATAAAGATGATAGGAGTAAGTTACGATATAATGATACAGCTACAGAAAAGTCTCATGTTGATGATCGGTTCCACAGACAGAGCTTGCCTCCTCCCCCTCCCTTGCCTCCTCACATGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGCAGATAGAAGGTTTGGAACTACTAGACACAGTCAAAGGCTTTCTCCTAGACACGAAGAGAAGGAACGGAGACAATCAGAGGAAAATTTAATTTCACAGGATGATGCAAAACGCAGAAGAGAGGAGGAATTTCGAGAAAGAAAGAGAGAAGAGAGAGAGGTGGGGATATCATTGAAGGTGGATGACAGGGAGAGGGAAAGGGAGAGAGACAAGGCAAACCTTTTGAAGGAGGACATGGACGCTGCTGCTGCCTCCAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTGGCTGAGGCTGGTGAGTATTCTCCTGCTGGCGCACCGCCATCTCTGGTTGGTGGTGGCGTGTCTCAATCTTATGATGGACGAGAAAGAGGAGACAGGAAGGGTGTAATGATGCAACGTGCCAGTTACTTGGATGAGCCAGGCTTGAGAATTCATGGTAAAGAAGTTGTCAACAAGATGACCAGA 5718 41.99 MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKTALDSVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLKLSTLRIRDSYDGESTTTSEWRPPFQPKLYLQDQQFNVCCQLKNLLEEYNAKWLVESAFVPLRLFQERCEEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCHVTDASNNNLPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKSHASQILGFKFQYYQRIEVNSPVPVGLYKLTALLVKEKFIDLDSIYAHLLPKEEEAFEHYESFSSKRLDEANRIGKINLAATGKDLMDDEKQGDVSIDLFAALDMESEAVNERSPELENNQTLGLLTGFLSVGDWYHAHVLFNRLLPLNPVEHLPICNCLFRFIEESISSAYSIVRQHYNQSFGTSSGASIDTRNLPVGGSFIDLPRELFQMLAAAGPYLYRDTILLHKVCRVLRGYYMSAIEFVNSVESGSNPEFVLQAGSRVPHLHLKEARLKIEEALGMCILPSLQLIPANPAVGQGIWEVMNLLPYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPLTVLRTILHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLVQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLINQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRNNKALIKSSNRLRDSLLSKDEPKLAVPLLLLISQHRSVVVINANAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAQLYHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVASNNSDSESAECSADVVLELGPSQKPVRWSDLLDAVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPQSRYESEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSNELNKHEENVASVRRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAATQSNSVYSSQNEHGGGKPTAVPSSDSGNMAKDHSLRSRTSDTRTDKIDGFSVPKSELGHGKLKGTSLNGPDSQPLVPSTSVHSGSLRVVEGPKPGDDLSRTSNEGSSKVIFKTSSESELRVSAKRNAPAGILSKAPKQDTTKDEIRSGKAASKNHGSSTSDRELPIHATDGGRHGSSYKTSSVMPNDYTQSSLTRGLSSSLKASDGHAIELKAESGVGRTSDSRASSVKENGTEALEVAKSSSSRLAHSPRHDNSASGSRSSDKLPKRASPAEEPDRQGKRRKGDGESRDVDGDFRNPDKDRSIDTRSVDADKIGMDEQSGYRGSDKPLERTKDKVNERYDRDYKDRAERSEKSRGDDPSVEKTRDRSIERYGRERSVEKVERVSDRYPDKSKDERDKDDRSKLRYNDTATEKSHVDDRFHRQSLPPPPPLPPHMVPQSVNSGRREEDADRRFGTTRHSQRLSPRHEEKERRQSEENLISQDDAKRRREEEFRERKREEREVGISLKVDDRERERERDKANLLKEDMDAAAASKRRKLKREHLSLAEAGEYSPAGAPPSLVGGGVSQSYDGRERGDRKGVMMQRASYLDEPGLRIHGKEVVNKMTR 1906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16878000 16913457 - Carg25249-RA Car04g02075 147500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02075 1906 MobiDBLite consensus disorder prediction 1519 1564 - -
Car04g02075 1906 MobiDBLite consensus disorder prediction 1331 1352 - -
Car04g02075 1906 MobiDBLite consensus disorder prediction 1474 1501 - -
Car04g02075 1906 Pfam Transcription- and export-related complex subunit 640 715 IPR021726 -
Car04g02075 1906 MobiDBLite consensus disorder prediction 1399 1421 - -
Car04g02075 1906 MobiDBLite consensus disorder prediction 1302 1885 - -
Car04g02075 1906 Pfam Transcription factor/nuclear export subunit protein 2 968 1262 IPR021418 -
Car04g02075 1906 MobiDBLite consensus disorder prediction 1566 1722 - -
Car04g02075 1906 Coils Coil 1019 1060 - -
Car04g02075 1906 Pfam THO complex subunit 2 N-terminus 474 638 IPR032302 -
Car04g02075 1906 Pfam THO complex subunit 2 N-terminus 131 466 IPR032302 -
Car04g02075 1906 Coils Coil 1781 1801 - -
Car04g02075 1906 MobiDBLite consensus disorder prediction 1366 1385 - -
Car04g02075 1906 MobiDBLite consensus disorder prediction 1741 1846 - -
Car04g02075 1906 MobiDBLite consensus disorder prediction 1302 1330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02075 K12879 THOC2; THO complex subunit 2 - csv:101221461 3217.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02075 Car15g00836 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00836 Car-Chr15:4788303 Car04g02075 Car-Chr4:16878000 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02075 Car_Chr04 FPKM 8.631918 10.521763 9.627852 10.783285 15.27849 10.960213 14.624581 20.322735 16.477913 16.076662