Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02077 ATGCAGCCAAACCACAACTCTGTGGCCAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACGTTTGTTCAAGCTAACAGGGCTTGGCTTCGTAAGTATCTTCTGCTGTGGATTATGGGGATGGCTTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGAAGGAATGAAGTGTTGGGGAGCATGTGTGAAGAGAGATCAAGGATGTTGCAAGATCAGTTCAGTGTTAGTGTCAACCATGTTCATGCCTTGGCTGTGCTTGTTTCCACCTTTCATTACTTCAAGACCCCTTCTGCAATTGATCAGGAGACTTTTGCAGAATACACAGCCAGAACGGCTTTCGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAGAGAGTGGTTCATTCAGAGAGGGATATATTCGAAAAGCAACATGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCCCCAATTCGAGATGAATATGCACCAGTTATATTTTCTCAAGAAACAGTCTCTTATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGCGAAAATATTTTGAGGGCTAGAGCAACAGGAAAAGCTGTCTTAACAAGCCCCTTCAGGCTGCTGGGCTCACATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAATCCAAATTGCCATCTATACCAACTGAAGAAGAACGTATAGAAGCAACAGCAGGCTACGTTGGTGGAGCCTTTGATGTTGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAACGTGTATGATGTTACGAACTCTTCTGACCCCCTCGTCATGTACGGTCATCAATATCAAGATGGTGACAAGTTTCTTTTGCATGGGAGTAGCCTTGATTTCGGAGATCCATTCAGGAAGCATCTGATGATTTGTAGATATCAGCAGAAGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTCTTATTCTTCGTTATCGGGTTATTAGTTGGATATATTTTATACGGTGCAGCAACTCACATCGTGAAGGTTGAAGATGATTTTCATGAGATGCAGGAACTGAAAGTTCGAGCTGAGGCTGCTGATGTTGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATTCTTGGAATGCTTGCTCTGCTTCTGGACACGGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGATCGGGCAAAAATTGAAGCTGGAAAATTAGAACTGGAAGCAGTTCCATTTGACATTCGATCAATACTTGATGATGTCCTGTCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTATCTGATAAAGTTCCAGAAATTGTAATTGGAGATCCAGGAAGATTCAGACAAATCATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACACATATTTGTTAAAGTACATCTAGCTGAGCACTCAAAAGGCTCCATCGACACAAAATATGTCAATGGAATGTCAGACAGTGACTTGTTTATATCGGATGGTCGTGAATTTCAAACTTTAAGCGGACGTGAGGCAGCTGATAATCAGAACAATTTGGATAACTTTAAACATCAAATTGCTGATGAGAACTCTCAGTCGAATGCTTCTCCAAACAACCCAACAGTAACTAATGAGTATTGTGGTCATGTCACATTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAAATCGAGTTTTCATGCCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAATTACGGAGGAACTGGTATCGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCAGATCAACTTCGTAAGTCAGCCTCAGATTGGTAGCACGTTTTCGTTCACTGCTGTTTTAGGAAAGTGCAAGAAAAATTCAATGAATAACATGAAAAAACCCAGCTCTGAAGAGCTTCCTCCCAGTTTTAGGGGAATGAAAGCAATAATAGTTGACAGGAAACCAGTTAGAGCTTCTGTAATCAGATATCATTTGAAGAGACTTGGTATCATAGTTGAAGTCACCAGTAGCATCAACATGGCAGCTTCTTTATGCGAAGAAAATGGCTCCATAGCACCAGGAAGCACACTCCTTCCAGATATGATCTTAGTTGAAAAAGACACATTGAAGTCTGATGAGGAATGTGGTATCATTCATCAACTGAACTGGAAACTGAATGCGAGTTCGTTTAAGTTACCGAAACTGATACTTCTTGCTACAAACATCACCACTGCAGAACTAGACAAGGCAAGGGCAGCAGGTTTTGCAGACACTGTGATCATGAAGCCATTGAGGGCGAGTATGGTTGCTGCCTGTCTTCAACAAGTACTTGATGTTAAGAACCAGAGGCGAGGAAGGGGCCTACCAAATGATTCTGTTTTCCTTCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAATAAAGTAAACCGAAGGGTCGCTGCAGGCGCTCTGAAGAAAGTAGGTGCAGATGTTGAGTGTGCAGAAAGCGGGAAAGCTGCACTGAAGTTGCTTGAGCTACCGCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCAACTCGTCTCATCAGGATGATGGAGAGCAAGGCAAACGAAGGATCATCTACAAGCAAAAGCGAGTGGCATGTACCAATATTAGCAATGACTGCAGATGTGATTCATGCTACCTACGACGAGTGCCTGAAATACGGAATGGATGGCTACGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAGGAAGTTGCCAAGATTTTCCAAAAATCATAG 2952 42.55 MQPNHNSVAKWNEQMGTTKKGYTFVQANRAWLRKYLLLWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEERSRMLQDQFSVSVNHVHALAVLVSTFHYFKTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDKFLLHGSSLDFGDPFRKHLMICRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDTKYVNGMSDSDLFISDGREFQTLSGREAADNQNNLDNFKHQIADENSQSNASPNNPTVTNEYCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSQPQIGSTFSFTAVLGKCKKNSMNNMKKPSSEELPPSFRGMKAIIVDRKPVRASVIRYHLKRLGIIVEVTSSINMAASLCEENGSIAPGSTLLPDMILVEKDTLKSDEECGIIHQLNWKLNASSFKLPKLILLATNITTAELDKARAAGFADTVIMKPLRASMVAACLQQVLDVKNQRRGRGLPNDSVFLQSLLCGKRILIVDDNKVNRRVAAGALKKVGADVECAESGKAALKLLELPHNFDACFMDIQMPEMDGFEATRLIRMMESKANEGSSTSKSEWHVPILAMTADVIHATYDECLKYGMDGYVSKPFEEENLYKEVAKIFQKS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16922796 16930709 - Carg25251-RA Car04g02077 147502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02077 983 Coils Coil 556 576 - -
Car04g02077 983 ProSiteProfiles CHASE domain profile. 103 315 IPR006189 -
Car04g02077 983 Coils Coil 426 446 - -
Car04g02077 983 Pfam Response regulator receiver domain 853 976 IPR001789 GO:0000160
Car04g02077 983 ProSiteProfiles Histidine kinase domain profile. 383 671 IPR005467 -
Car04g02077 983 ProSiteProfiles Response regulatory domain profile. 852 980 IPR001789 GO:0000160
Car04g02077 983 Pfam His Kinase A (phospho-acceptor) domain 376 441 IPR003661 GO:0000155|GO:0007165
Car04g02077 983 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 488 669 IPR003594 -
Car04g02077 983 ProSiteProfiles Response regulatory domain profile. 696 826 IPR001789 GO:0000160
Car04g02077 983 Pfam CHASE domain 106 286 IPR006189 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02077 Car15g00833 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02077 Car-Chr4:16922796 Car08g00164 Car-Chr8:999747 0 dispersed
Car04g00025 Car-Chr4:110214 Car04g02077 Car-Chr4:16922796 0 transposed
Car15g00833 Car-Chr15:4772091 Car04g02077 Car-Chr4:16922796 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3425 PF02518 HATPase_c 4.10E-31 CL0025 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02077 K14489 - csv:101209777 1747.64