Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02084 ATGTTGGCTGTTGGTAGTCCTTTTGCCAGTGTTCGCACGAGCTCTAGTTGTAATGCTTTACTCAGAGAACTTCAGCAAATATGGAATGACATTGGCGAGAGTGAAGCTGACAAAGACCGTATGCTCCTGGAATTGGAGAGGGAATGCTTGGAAGTGTATAGGAGAAAGGTCGAGGAAGCTGTGAATGCCAAGGCACGACTCCATCAATCCGTTGCGTCGAAGGAGGCCGAGGTTGCAACATTGATGGCTGCTCTTGGTGAACTAAGTTCTTCGAGTCAGGTTGAGAAGAGGTCCAAAACATTGAAGGAAAAGCTTGCTTCTGTCACTCCCTTAGTAGAAGAGTTGAAGACAAAGAAAGAAGAGCGTTTGAAACAATTCGCAGATATAAAAGCCCAAATCGAGAAGATCGGTGTCGAGATTTCAGGATATAGCAACCATCTTAATGACCACACGATCATCAATAGTTTAACCTTGGAAGAAACAGACCTGTCTTTGAGAAAGCTTAATGAGTATCAAACTCATCTTCGCACCCTGCAAAAGGAGAAGTCTGATCGACTTCATAAGGTTTTGGAACATGTTAGTGAGGTTCATTCTCTCTGTGGCGTTCTTGGCGTGGATTTCGGCCAGACTGTAAGTGATGTGCATCCGAGCTTAGAAAGAACGAGCGTGGAACAAGCTACCAATATCAGCAATAGCACATTGGAAGGCCTAGAACACACTATTCGTACATTGAAAGCAGAAAGGAAAACTCGAATTCAGAAGTTGAAGGACATATTAACATCACTATTTGAACTTTGGAACTTGATGGACTCCTCACATGATGAAAAGAGTAAATTTTCCGGGATAACTTCCATTGTACGTGTACCTGAAACAGAAGTCACAGAGCCAGGTCTTCTCTCCACAGAGACGATTGAACAGGCATCAGCAGAAGTGGAGAGGTTAACTAAACTAAAAGCGGGTAGGATGAAACAGCTCGTAATGAAGCGAAGGTCTGAGTTGGAGGAGATTTGTAGAATGACTCACATTGAAGCTGATCCTAGCACAGCTTCTGAGAAATCAAATGCTTTGATAGATTCAGGTAATCAATTATACAAAATCGACTTCTCGCTTTGTCGTTTTATAGGTCTCGTAGATCCTTCTGAACTCCTTGCAAACATTGAAGTGCAAATCGTCAAAGTAAAAGAAGAAGCCACAAGCCGAAGAGACATAATGGATCGAATAGACCGTTGGCTGTCAGCATGTGAGGAAGAAAATTGGCTTGAAGAGTATAATCAAGACGAGAATCGTTATAATGCAGGGAGAGGTTCACACGTTAATCTGAAACGTGCAGAACGAGCAAGAGTGACTGTTAGCAAAATCTCAGCTATTGTTGATAATCTGATAAACAGAACTCTGGCCTGGGAAGATGAAAAGAAGACAATGTTTCTTTATGATGGGGCAAGATTGGTGACTATACTTGAAGATTATAAGTTAAGTAGACAACACAGAGAAGAGGAGAAAAAGAGACACAGGGATCAAAAGAAACTCCAAGATATCCTCCTAACAGAAAAGGAAGCTATGTATGGATCTAAACCCAGTCCTAGGAAGAGCAACAGCTTTAGGAAGACTAATGGATATCGGGCGAACGGGAATGGATCAATGACGCCAATGCCTCGTCGAAACTCTGTTGGTGGAGCGACCCCAGAGCTCCTCACTCCTAGATCCTATTCCGGGCGCCAAAATGGATACTTCAAAGAAATGAGGAGGTTGTCTACTACACCATTGAATTTTGTGGCCATGTCTAAGGATGATACAATGTCATATGCTTCCATGTATGGATCTGAGCCAGGTTCTCCACCCCGGAGTTAA 1848 42.97 MLAVGSPFASVRTSSSCNALLRELQQIWNDIGESEADKDRMLLELERECLEVYRRKVEEAVNAKARLHQSVASKEAEVATLMAALGELSSSSQVEKRSKTLKEKLASVTPLVEELKTKKEERLKQFADIKAQIEKIGVEISGYSNHLNDHTIINSLTLEETDLSLRKLNEYQTHLRTLQKEKSDRLHKVLEHVSEVHSLCGVLGVDFGQTVSDVHPSLERTSVEQATNISNSTLEGLEHTIRTLKAERKTRIQKLKDILTSLFELWNLMDSSHDEKSKFSGITSIVRVPETEVTEPGLLSTETIEQASAEVERLTKLKAGRMKQLVMKRRSELEEICRMTHIEADPSTASEKSNALIDSGNQLYKIDFSLCRFIGLVDPSELLANIEVQIVKVKEEATSRRDIMDRIDRWLSACEEENWLEEYNQDENRYNAGRGSHVNLKRAERARVTVSKISAIVDNLINRTLAWEDEKKTMFLYDGARLVTILEDYKLSRQHREEEKKRHRDQKKLQDILLTEKEAMYGSKPSPRKSNSFRKTNGYRANGNGSMTPMPRRNSVGGATPELLTPRSYSGRQNGYFKEMRRLSTTPLNFVAMSKDDTMSYASMYGSEPGSPPRS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16981193 16985641 + Carg25258-RA Car04g02084 147509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02084 615 MobiDBLite consensus disorder prediction 525 553 - -
Car04g02084 615 Coils Coil 50 70 - -
Car04g02084 615 MobiDBLite consensus disorder prediction 519 572 - -
Car04g02084 615 Pfam Microtubule associated protein (MAP65/ASE1 family) 19 531 - -
Car04g02084 615 Coils Coil 486 506 - -
Car04g02084 615 Coils Coil 112 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02084 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - csv:101208264 1073.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02084 Car05g00051 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02084 Car-Chr4:16981193 Car06g00728 Car-Chr6:4646707 1.48E-172 dispersed
Car15g00828 Car-Chr15:4720769 Car04g02084 Car-Chr4:16981193 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g550 . Blo16g01197 . . . . . . . . . . . . . . Cpe01g01863 . . . . . . . . . . . . . . . . Cone6ag0334 Cone9ag0370 . . . . . . . . . . . Bma06g00578 . Cmo04g02243 Cmo15g00917 Cma04g02150 Cma05g00061 Car04g02084 Car05g00051 Cpe13g00434 . Bhi12g00978 . . . Hepe02g2591 . Lcy10g1585 Cla01g00662 Cam01g0693 Cec01g0685 Cco01g0713 Clacu01g0681 Cmu01g0656 Cre09g1850 Lsi09g00716 Csa05g01289 . Cme09g01291
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007189 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02084 Car_Chr04 FPKM 111.017799 119.110512 541.808594 533.063232 56.22924 58.262695 54.929115 125.859383 131.378571 123.954742