Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02106 ATGATCGGGAAGGTGGTCGTTTCGGGTGTATCCTTTATTCTCGTCGTAGGTGTAGCTCTTGCCGTCGTTGCAGTCGTTAACAAGAGAAATGACACGGCAGCTGAGATGCAGACTCTGTCCCCAAAGATGAAGGCAGTCGCAGGCATTTGTTCGGGTACTGATTATCCGAAGGAATGCCAATCTACTCTTTCCACAACTGCACAAAATTCCACTTCAGATGATCCTAAACAATATCTTAAAGCGGCCATTGTTGCCACTGTTGAAGAGATTACAAAAGGCTTGAATTTAACAGATACCCTTCGAGTGGAGGCTGCTGATAATACCACCATCCAAATGTCTGTTGATGATTGCAAGGACTTATTGCAGTCTGCTATTGACTCGCTTCATGCATCTCAGTCCACTGTTGGGGACCCTGATATGCACACTAATGCAGACCGTGTCGGTGATGTTAAGACATGGCTCAGCGCTGTCATTTCTTTTCAGCAATCTTGTCTCGATGGGCTGGAGGAAACTGATCCCGATCTCAGACAGAAGATGCAAGGCGAGCTTGATTCTGCTGGCAAGCTTACCAGCAATGCTCTTGCTATCCTCGATGAAGTTGTGGGGATATTGGAGAAGCTTGGCTTGCAATTGAAGGTTCAACCAAGTGGGCGTAGGCTTCTTGGGACGACAGAAGTAGGAAGCGATGGGTTCCCGACATGGTTGGTGGGGGAAGACAGGAAGCTGCTGGCAGCTAGAGGAGGCGCCGGGCGAGTGAAGCCCAACGCCGTGGTTGCTAAGGATGGTAGTGGGCAGTTCAAGACCATTGCCGCTGCATTGGCTGCATACCCAAAGGTTCCAACGGGAAGATATGTGATCTATGTGAAAGCAGGGGTGTATGATGAGTACATCATTGTGACTAAAAACATGGAGAACATTTTCATGTATGGAGATGGCCCTAGATCAACTATTGTCACTGGCCGTAAGAGCAACCGCGATGGCGTTACCACCCAAGACAGTGCCTCCTTCTCGGCCATAGGAAATGGATTCCTCTGCAAATCCATGGGATTCAGCAACACAGCCGGCCCCGAAGGCCACCAGGCCGTAGCCCTAAGAGTCCAATCCGACAAGTCCGCGTTCTTCAACTGCAGAATGGACGGGCACCAAGACACCCTGTACGTTCAAGCCAACCGTCAATTCTACAGGAACTGCGTGATCTCTGGCACCGTGGACTTCATCTTCGGCGATTCGTAA 1233 49.96 MIGKVVVSGVSFILVVGVALAVVAVVNKRNDTAAEMQTLSPKMKAVAGICSGTDYPKECQSTLSTTAQNSTSDDPKQYLKAAIVATVEEITKGLNLTDTLRVEAADNTTIQMSVDDCKDLLQSAIDSLHASQSTVGDPDMHTNADRVGDVKTWLSAVISFQQSCLDGLEETDPDLRQKMQGELDSAGKLTSNALAILDEVVGILEKLGLQLKVQPSGRRLLGTTEVGSDGFPTWLVGEDRKLLAARGGAGRVKPNAVVAKDGSGQFKTIAAALAAYPKVPTGRYVIYVKAGVYDEYIIVTKNMENIFMYGDGPRSTIVTGRKSNRDGVTTQDSASFSAIGNGFLCKSMGFSNTAGPEGHQAVALRVQSDKSAFFNCRMDGHQDTLYVQANRQFYRNCVISGTVDFIFGDS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17173079 17174418 + Carg17713-RA Car04g02106 147531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02106 410 Pfam Pectinesterase 255 410 IPR000070 GO:0030599|GO:0042545
Car04g02106 410 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Car04g02106 410 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Car04g02106 410 Pfam Plant invertase/pectin methylesterase inhibitor 45 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02106 Car-Chr4:17173079 Car04g01903 Car-Chr4:11212776 1.27E-98 dispersed
Car06g00007 Car-Chr6:105652 Car04g02106 Car-Chr4:17173079 9.75E-35 dispersed
Car15g00807 Car-Chr15:4568998 Car04g02106 Car-Chr4:17173079 2.30E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02106 K01051 - csv:101220540 584.719