Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02113 ATGAATGGGAAGGATGAATATGAAGATGAGTGTAGGACTAGTGATCCTATGAGTATCTCCTCTAGTTGGCAATTTGCTAATGAGTCGATCGGATTCGTTTCGACCGGGAATCCCTCGGTCGTTGGCAATGGAGATCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATGTCGAACTTGTTTACTCCAACCGTGTTGAATGATCATACGAACTCGAGGTTCTGCAGCGGTTTTAATGAACAAAACAGTATAGATGATTCTAATGTGACCGTTGTTGATGGGGAAGGTCTGAGTTCTTTGAGATCTAGTAGTGATAGAATTCTGGGTATGGATTGGAACCAACAAAGTTCATGGATGAAAGGAGTTTTCTCAGGGAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAGCTACCAGCTGATTCGGCGTTCATAGAGCGTGCAGCACGGTTCTCTTGCTTCAATGGTGGCGTTTTCGGGGCTCCGCCTGCTGGTTCATTTGGTATTTCAGGCTCTAATGGCATTCATTCTAGGGGTGCCTTTGGAAGTCAGGAACTAAACAAGGTTGTGTTGGAGGGTAAAGAAAAGAGTCCACCAAAGACCGAGAAAGAAAGCGAGATGTCTCGAGACAGGGCTAAACAAGGTTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAGCTGGGTTTAGTGGCGGTCAAGACGAGCAATGCACGTTGGGAGGTACCATTGCCGAACCATCTCGGGAAGGATTGTGCTTCAAGAAACGGAAAAGGGGCGATCGGAATATGGAACTTGCTCAAGTTAAAGAAGCTCCGAAACAAATTAACGAAACTGCGAAGAACGGGGCGTTAACTCGGCAGAACGGAGACAGAGACCAAAACCCAAGTTTTACTACTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAACCGTCGGATGCGCCCAAAGAAGAATATATTCACGTTAGAGCTCGAAGAGGCCAGGCGACGAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAAGACCTCGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAGATCATTAACTATGTTCAATCGCTGCAACGACAAGTCGAGTTTTTATCAATGAAACTTGCAACAGTTAATCCCAAGCTGGATTTTAACATCGAAGAGCTCCTTACAAAAGAAATCATGCAATCAAAGGCTGGTCCATCCTTATTTGGTTTCCCTCCTGATCTGCCTATGCCTTACCTCCCGCAACATCCGACTCACCATGGAGTTATTCCGCCTTGTATCCCGAACATGGGGAGCTCTCCCGACCTGCTACGAAGAACGATTAATTCCCAGTTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCGAATGTATGGGAGAACGAGCTCCACAATGTCGTTCCAAGGAACTTCGACGTTCCTGCCCCCCCCAGTGACCAAGATGTCGATGGTACTATTCGTTCAAGTTTCTCCGTAGGCTAA 1542 46.3 MNGKDEYEDECRTSDPMSISSSWQFANESIGFVSTGNPSVVGNGDLGVSSCPSTSMSNLFTPTVLNDHTNSRFCSGFNEQNSIDDSNVTVVDGEGLSSLRSSSDRILGMDWNQQSSWMKGVFSGNVPGMFPANLSQLPADSAFIERAARFSCFNGGVFGAPPAGSFGISGSNGIHSRGAFGSQELNKVVLEGKEKSPPKTEKESEMSRDRAKQGCVGESGNESDEAGFSGGQDEQCTLGGTIAEPSREGLCFKKRKRGDRNMELAQVKEAPKQINETAKNGALTRQNGDRDQNPSFTTNKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPKLDFNIEELLTKEIMQSKAGPSLFGFPPDLPMPYLPQHPTHHGVIPPCIPNMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNVWENELHNVVPRNFDVPAPPSDQDVDGTIRSSFSVG 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17212997 17215979 - Carg17720-RA Car04g02113 147538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02113 513 MobiDBLite consensus disorder prediction 277 310 - -
Car04g02113 513 MobiDBLite consensus disorder prediction 190 241 - -
Car04g02113 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 379 IPR011598 GO:0046983
Car04g02113 513 MobiDBLite consensus disorder prediction 491 513 - -
Car04g02113 513 Pfam Helix-loop-helix DNA-binding domain 332 380 IPR011598 GO:0046983
Car04g02113 513 MobiDBLite consensus disorder prediction 190 212 - -
Car04g02113 513 MobiDBLite consensus disorder prediction 262 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01621 Car-Chr4:9365225 Car04g02113 Car-Chr4:17212997 1.09E-109 dispersed
Car04g02113 Car-Chr4:17212997 Car18g00999 Car-Chr18:10438430 1.29E-102 dispersed
Car09g00262 Car-Chr9:1434733 Car04g02113 Car-Chr4:17212997 2.26E-47 dispersed
Car19g00518 Car-Chr19:6820800 Car04g02113 Car-Chr4:17212997 2.49E-50 dispersed
Car15g00796 Car-Chr15:4524480 Car04g02113 Car-Chr4:17212997 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3428 PF00010 HLH 6.20E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02113 - - csv:101216110 825.083