Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car04g02171 | ATGTCTGGTTCTGATGGCGTCTCCCACAACAATGGCGCCATAATTCCCCACTCTCAACAGAGCACCCAGACCACCACCAACAATGGCGCTCTGCCTCTCAAGAAACCCCCTGCTAAGGACCGCCACAGCAAGGTCGATGGCCGTGGCCGTCGTATTCGTATGCCCATCATTTGTGCTGCTCGTGTCTTTCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGTCAGACCATTGAGTGGCTCCTCCGTCAAGCAGAGCCTTCCATTATTGCCGCCACTGGCACCGGCACTACTCCAGCTAGCTTCTCCACCATCTGCGCTTCCCTCCGTGGCACTCCTGCCGCTCTTTCCTCTTCAGCTTCTCTCGACCATAAACCCCTTTTGCCTCCTGCCCCTTTCATTCTCGGTAAGCGCGTTAGACCTGACGACGATGCAGGGCATAAAGACAACGACGGCAACGGCGGCGGCGGTGGCGGTAATGGTGGTGGGGGTGCTATTTCTGTCGGCCCTTCTGTTGGTTCTATTATGGGTTCAGCTGCTGCGGGTGGATACTGGGCGTTTCCAGCTAGGCCGGATTTCGGACAGGTATGGAGTTTCGCCGCTGCTGCAGCTCCGGAGATGGTGATTCAACCGACGGCGATTTCTCATCAGGCGTCGTTATTCGCTCAGCAGCAATCAATTGGAGAAGCCTCGGCGGCGAAAGTGGGAAATTACCTTCCCGGTCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACAGGGAAGTTCCGGGCGGAGAGACAACGACCACCGTTGA | 795 | 56.48 | MSGSDGVSHNNGAIIPHSQQSTQTTTNNGALPLKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTICASLRGTPAALSSSASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGSAAAGGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAISHQASLFAQQQSIGEASAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 17624847 | 17625641 | - | Carg17778-RA | Car04g02171 | 147596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car04g02171 | 264 | MobiDBLite | consensus disorder prediction | 132 | 165 | - | - | |
Car04g02171 | 264 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Car04g02171 | 264 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Car04g02171 | 264 | ProSiteProfiles | TCP domain profile. | 38 | 92 | IPR017887 | - | |
Car04g02171 | 264 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 1 | 261 | IPR005333 | GO:0003700 | |
Car04g02171 | 264 | Pfam | TCP family transcription factor | 38 | 123 | IPR017887 | - | |
Car04g02171 | 264 | PANTHER | TRANSCRIPTION FACTOR TCP21-RELATED | 1 | 261 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g01351 | Car-Chr4:7823374 | Car04g02171 | Car-Chr4:17624847 | 1.31E-98 | dispersed | |
Car04g02171 | Car-Chr4:17624847 | Car18g00741 | Car-Chr18:8490719 | 6.13E-80 | dispersed | |
Car15g00738 | Car-Chr15:4134034 | Car04g02171 | Car-Chr4:17624847 | 2.37E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3434 | PF03634 | TCP | 4.10E-31 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car04g02171 | K16221 | - | csv:101214586 | 365.155 |