Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02171 ATGTCTGGTTCTGATGGCGTCTCCCACAACAATGGCGCCATAATTCCCCACTCTCAACAGAGCACCCAGACCACCACCAACAATGGCGCTCTGCCTCTCAAGAAACCCCCTGCTAAGGACCGCCACAGCAAGGTCGATGGCCGTGGCCGTCGTATTCGTATGCCCATCATTTGTGCTGCTCGTGTCTTTCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGTCAGACCATTGAGTGGCTCCTCCGTCAAGCAGAGCCTTCCATTATTGCCGCCACTGGCACCGGCACTACTCCAGCTAGCTTCTCCACCATCTGCGCTTCCCTCCGTGGCACTCCTGCCGCTCTTTCCTCTTCAGCTTCTCTCGACCATAAACCCCTTTTGCCTCCTGCCCCTTTCATTCTCGGTAAGCGCGTTAGACCTGACGACGATGCAGGGCATAAAGACAACGACGGCAACGGCGGCGGCGGTGGCGGTAATGGTGGTGGGGGTGCTATTTCTGTCGGCCCTTCTGTTGGTTCTATTATGGGTTCAGCTGCTGCGGGTGGATACTGGGCGTTTCCAGCTAGGCCGGATTTCGGACAGGTATGGAGTTTCGCCGCTGCTGCAGCTCCGGAGATGGTGATTCAACCGACGGCGATTTCTCATCAGGCGTCGTTATTCGCTCAGCAGCAATCAATTGGAGAAGCCTCGGCGGCGAAAGTGGGAAATTACCTTCCCGGTCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACAGGGAAGTTCCGGGCGGAGAGACAACGACCACCGTTGA 795 56.48 MSGSDGVSHNNGAIIPHSQQSTQTTTNNGALPLKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTICASLRGTPAALSSSASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGSAAAGGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAISHQASLFAQQQSIGEASAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17624847 17625641 - Carg17778-RA Car04g02171 147596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02171 264 MobiDBLite consensus disorder prediction 132 165 - -
Car04g02171 264 MobiDBLite consensus disorder prediction 1 31 - -
Car04g02171 264 MobiDBLite consensus disorder prediction 1 47 - -
Car04g02171 264 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
Car04g02171 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 261 IPR005333 GO:0003700
Car04g02171 264 Pfam TCP family transcription factor 38 123 IPR017887 -
Car04g02171 264 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01351 Car-Chr4:7823374 Car04g02171 Car-Chr4:17624847 1.31E-98 dispersed
Car04g02171 Car-Chr4:17624847 Car18g00741 Car-Chr18:8490719 6.13E-80 dispersed
Car15g00738 Car-Chr15:4134034 Car04g02171 Car-Chr4:17624847 2.37E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3434 PF03634 TCP 4.10E-31 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02171 K16221 - csv:101214586 365.155