Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02176 ATGGCGAGCCGATACTGGATGGTTTCTTTACCCGTTCAAGGCTCCGCTTCTTCCCTATGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGCGTTGGAACGCTGGATTCGCTCCTTTCCCTTAGCGATGATCTCCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAAAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCTGGTGTGGAGAGCCACGGCTTGACGGTTGATGGAGTCCCCGTTGATTCGTACCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGATATTGTGGATAGCATTCACACTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGGGTTGCTGAGTACAATAACGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTCGAAACCCTTCTTGTGATTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAGTATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGCGGACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAGGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTATGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTCTTCATTTCCTGGATGCACTTTTGCGCTGTACGTGTCTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTTAGGTCAATCCTTGAAGGTTTGTGCGACAGTGCTAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGCAGGGATGGCTGGTCTTGGAGGAGAATCTGATGCACACCCATATGTGTCCTTCACAATCAATCTTGCCTAA 1131 44.83 MASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESHGLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHTQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLETLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSGREKGFQIREFEYSPEAQESRKQELEKLVQDQESMRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGAGMAGLGGESDAHPYVSFTINLA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17709162 17713455 - Carg18308-RA Car04g02176 147601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02176 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Car04g02176 376 Gene3D - 163 251 - -
Car04g02176 376 Gene3D - 41 312 - -
Car04g02176 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 IPR004907 GO:0033180|GO:0046961|GO:1902600
Car04g02176 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Car04g02176 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Car04g02176 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 - -
Car04g02176 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00734 Car-Chr15:4091705 Car04g02176 Car-Chr4:17709162 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02176 K02148 - csv:101221574 709.909