Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02179 GTAATTGATCCAAGAAGGCTGAAGTTTCTTTTTCAGAAGGAGCTGAAGAACAGTGATGTTAGCTCTCTTAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTCCCAACTTTGGAGTCTAAAGAAGGAATCATCATCACCATGGATGACTTGGATGGAGTCCATGTTTGGAACTTTAAATATAGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAACACGGGGGACTTCGTCAACGCCCATGGCATACAACTAGGAGATTTCATCTTGGTTTACCAAGATTTTGAAGATCATAGCTATGTCATTCAAGCAAAAAAGGCGTCCGATCCAGAAATATATTCCGACATAGCAAATAGTTGCGTTATGAATGGCGATATTGTGTTTCAAGACTTCAATGCTACCAAAGCTGCTAACTCTATGTACGTGCCTAGTTCAACTATGGACGATCCCGTGTCATCGTTTATCTACGATACTAGCTCAGCTTTCGATAACGATTCGTCGTTTGACTTTATGAGTAGCTCAATGACCAACTACTCGAGAATGGGAGGTATCGAAGGGTTTGGATCAGTCGAGAACTTGTCGCTCGATGACTTCTACTAA 615 41.3 VIDPRRLKFLFQKELKNSDVSSLRRMILPKKAAETHLPTLESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGIQLGDFILVYQDFEDHSYVIQAKKASDPEIYSDIANSCVMNGDIVFQDFNATKAANSMYVPSSTMDDPVSSFIYDTSSAFDNDSSFDFMSSSMTNYSRMGGIEGFGSVENLSLDDFY 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17723333 17724311 - Carg18305-RA Car04g02179 147604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02179 204 ProSiteProfiles B3 DNA-binding domain profile. 11 113 IPR003340 GO:0003677
Car04g02179 204 Pfam B3 DNA binding domain 11 109 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02179 Car-Chr4:17723333 Car17g01158 Car-Chr17:8934830 9.09E-40 dispersed
Car15g00731 Car-Chr15:4079284 Car04g02179 Car-Chr4:17723333 2.41E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3435 PF02362 B3 2.60E-17 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02179 - - cmo:103504182 335.495