Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02184 ATGTTATCGATTGAGAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGTTGCTGCCACAACCAACAAAGAAGTTGATGGGCATATCCCGAATTACCCGAACCTGCCTCCCCAGTTGATATGTCAACTTCACAACGTTACGATGCATGCAGATGTGGAAACGGATGAAGTATACGCTCAAATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCTATGGAATTGGGGATTCCAAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACTGCAAGTGATACGAGCACTCATGGAGGATTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGACTTCTCACAGCAGCCACCGGCACAAGAGCTGATTGCACGGGATCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTCAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAACGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACACGACCACAAACTGTGATGCCCTCTTCTGTTCTATCAAGTGATAGCATGCACATTGGACTCCTTGCGGCTGCTGCTCATGCTGCCGCAACCAATAGCTGTTTCACAGTTTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGGATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCGAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTCGATCCTGTTCGTTGGTCGAATTCTCATTGGCGTTCTGTCAAGGTCGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAGTTGAGCCGTTAACTACATTTCCGATGTACCCTTCCCTTTTTCCGCTTCGATTGAAACGTCCATGGCATCCTGGAGTCTCGTCTGTTCATGAAATTTTGGCACCCTGTTTTGTCATTTACCAGGGATTGCTTATGCTCACGGGTCATGACGTTTTTTTAATGGTCTATTTCCTTACAGATAACAGAGATGATGCATCGAATGGCTTAATGTGGCTACGGGGAGGAGTCGGGGAACAAGCTCTACACTCGTTGAATTTGCAATCCGCGGGTTCACTGCCCTGGTTGCAGCAGAGACTTGATTCTTCCATGTTTGGAAACGATCATAACCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCGAACCTTGGAGGTGTCGATATGCTGAGACAGCAAATTATGCATCTTCAACAGCCGTTCCAGTACGCTCAACAGGCAGGCCTCCATAATTCTCTGTTGCAGCTGCAACAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAAGCACCAACCCAAGTTATGGCAGAAAACCTACCCCAACATATTCTTCAGCAAACGCTACAAAATCAACCCGAGGATCTGCCGAACCAGCAACAGCATACGTATCATGATACCGTTCAGGTTCAAAGCAATCAATTTCATCAGGGCGGGCATTCAAACGTGCCATCGCCCACGTTTCCCAGATCAAACCTTATGGATTCGAATTCAAATTACCCAGAATCCATTTCCTCTAGAAGAAACATAATTGCTTCATCATGTGCTGAAGGGACTGGAAATCTTTCCAATATTTATAGAAGCGGGCAATCGATCTTAACCGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACCGGTCGACGCTCACCCAAACTCGATGTCCTTTCCATTTTCTGGTAGAGACTCGATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTTAATATTGATTCATCTGGGCTTCTGCTTCCCTCTAATGTGCCCACTTATGCTTCTCCATCAATTGCTCCTGATTCAACCTCAATGCCACTGGGAGATTCTGGATTTCAGAACTCTTTGTACAATTGTGTTCAAGGCTCTTCCGAGTTATTGCACAGCTCGGGGCAAGTTGATCCGTCGAATCCAACTCAGACATTTGTGAAGGTTTACAAAACCGGGTCCATTGGGCGTTCGCTAGACATCTCCCGGTTCAGTAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGCATAGAGGGACAGTTGGAAGACCCTCGTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGCACTTCTCCTTGGAGACGACCCTTGGGAGGCATTTGTCAATAATGTTTGGTATATCAAGATACTTTCTCCTCAAGACGTTCAGGAACTAAGGGAACAGGTAATCGAGTCCTTCAACCCTATCGATGGTCAGCGACTAACCAGTGGTGGCAACGAAGCCGAAAATGTTTCGGGGCTACCGTCTGTTGGTTCGTTGGAATACTGA 2652 46.68 MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEVEPLTTFPMYPSLFPLRLKRPWHPGVSSVHEILAPCFVIYQGLLMLTGHDVFLMVYFLTDNRDDASNGLMWLRGGVGEQALHSLNLQSAGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYAQQAGLHNSLLQLQQQQLVQQSMPQNILQAPTQVMAENLPQHILQQTLQNQPEDLPNQQQHTYHDTVQVQSNQFHQGGHSNVPSPTFPRSNLMDSNSNYPESISSRRNIIASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHSPVDAHPNSMSFPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIAPDSTSMPLGDSGFQNSLYNCVQGSSELLHSSGQVDPSNPTQTFVKVYKTGSIGRSLDISRFSSYQELREELAQMFGIEGQLEDPRRSGWQLVFVDRENDALLLGDDPWEAFVNNVWYIKILSPQDVQELREQVIESFNPIDGQRLTSGGNEAENVSGLPSVGSLEY 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17745726 17760663 - Carg18300-RA Car04g02184 147609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02184 883 MobiDBLite consensus disorder prediction 861 883 - -
Car04g02184 883 ProSiteProfiles PB1 domain profile. 758 843 IPR000270 GO:0005515
Car04g02184 883 Pfam AUX/IAA family 755 843 IPR033389 -
Car04g02184 883 Pfam Auxin response factor 266 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car04g02184 883 Pfam B3 DNA binding domain 140 241 IPR003340 GO:0003677
Car04g02184 883 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01289 Car-Chr3:9838753 Car04g02184 Car-Chr4:17745726 0 dispersed
Car04g02184 Car-Chr4:17745726 Car13g00401 Car-Chr13:6546260 0 dispersed
Car07g00074 Car-Chr7:482444 Car04g02184 Car-Chr4:17745726 1.79E-105 dispersed
Car15g00728 Car-Chr15:4049286 Car04g02184 Car-Chr4:17745726 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3437 PF02309 AUX_IAA 2.00E-08 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02184 - - csv:101208098 1578.15