Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g02193 | ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACAGTAGCTGTAGCTCTCACATCTCCAGTAGCCTCCCATTTCTCTTCTTCCACCTCCTCGCCGTTGCCGGAGTCAGCTCCGTCTCTCTCCGACTGGAGATCTGCTCGGGCCACCTACTACGCCGCCTCCGATCCTCGTGATGCGGTCGGCGGAGCATGTGGATATGGCGATTTGGTGAAGGCAGGTTATGGCATGGCGACGGTGGGGCTCAGTGAGGCGCTGTTCGAACGTGGCCAGATCTGCGGTGCCTGCTTTCAGCTCCGGTGCGTGGAGGACCTCCGGTGGTGTATTCCTGGCACTTCTATTATTGTCACTGTTACTAATTTCTGTGCACCTAATTATGGCTTCACGGCTGACGGTGGAGGCCGTTGTAATCCTCCTAATAAGCATTTTGTGCTCCCTATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGTTTCGTACTGGTAATTCAGTTAGAACTTTCAAGAACCCTTGGATTGACTGTGATTCGATTGCGCCTAAGCTTCCATGTACTTTGGCTCATCGATCAAATGTCGAAAGGAGGGGGGGGGTTCGATATACGATTTCTGGGTACGGCATCTACCTCTCAGTGTTGATAAGCAACGTTGCAGGCGCTGGAGATGTCAGTGCTGTAAAGATCAAGGGCTCAAGAACCGGTTGGCTTTCGATGGGTCGAAATTGGGGTCAAAACTGGCACATTAACGCCGATTTGAACAATCAGGCCCTGTCCTTTGAAGTCACTAGCAGTGACGGAGTAACAATTACGTCCTACAATGTTGCTCCAAAGAATTGGAACTTCGGACAGACTTTTGAAGGCAAACAATTTGAATCTTGA | 900 | 50.67 | MSPSLPLHFLFTVAVALTSPVASHFSSSTSSPLPESAPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTADGGGRCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRFRTGNSVRTFKNPWIDCDSIAPKLPCTLAHRSNVERRGGVRYTISGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLSMGRNWGQNWHINADLNNQALSFEVTSSDGVTITSYNVAPKNWNFGQTFEGKQFES | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 17849293 | 17852165 | - | Carg18291-RA | Car04g02193 | 147618 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g02193 | 299 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 215 | 294 | IPR007117 | - | |
| Car04g02193 | 299 | Pfam | Expansin C-terminal domain | 206 | 283 | IPR007117 | - | |
| Car04g02193 | 299 | Pfam | Lytic transglycolase | 79 | 164 | IPR009009 | - | |
| Car04g02193 | 299 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 61 | 166 | IPR007112 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02193 | Car-Chr4:17849293 | Car01g00552 | Car-Chr1:3258039 | 5.64E-85 | dispersed | |
| Car15g00717 | Car-Chr15:3983455 | Car04g02193 | Car-Chr4:17849293 | 3.38E-173 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g02193 | - | - | csv:101206236 | 483.796 |