Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02196 ATGGTTCTTTCCAAGACTGCTTCTCAGTCGGATGTCTCCGTCCATTCCACGTTCGCTTCGCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGTCGGAAAATTCAATCCCTAAGGAAGCTGCGTTCCAGATCATCAATGATGAACTCATGCTCGATGGAAACCCTAGGCTGAATCTGGCCTCCTTCGTTACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTCCAGAATCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGGGAGAATGAGACGGCGGTGGGAGTTGGAACAGTGGGATCGTCGGAGGCCATAATGTTGGCTGGCTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGCAAGCCCTATGACAACCCCAACATTGTCACCGGAGCTAATGTCCAGGTATGCTGGGAGAAATTCGCAAGGTACTTCGAGGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTACTACGTGATGGATCCAGAGAAAGCTGTGGATTTGGTTGATGAGAACACCATCTGTGTAGCAGCCATCTTGGGCTCCACTCTCAATGGAGAATTCGAAGATGTGAAGGTCTTAAACGATCTCTTAATCGAGAAGAACAAGGAAACCGGATGGGAGACTCCTATTCATGTTGATGCTGCGAGTGGAGGGTTCATTGCCCCATTCATATACCCTGATCTAGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGCGCCGACCAACCCACTTTCACTCTCAATTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAGAACTGCAAAGAAAACATGATTGTTCTCAAGGAAGGACTGGAAAAAACAGGGCGGTTCAACATTGTGTCTAAGGACGAAGGAGTTCCACTAGTGGCATTCTCCTTGAAAGACAGCAGTCGTCACACAGAGTTTGAAGTCTCAGAAATGCTTAGGAGGTTCGGGTGGATCGTGCCAGCTTACACGATGCCTCCGGACGCGCAGCACATTACAGTTCTAAGAGTGGTGATCCGAGAAGATTTCTCACGCACACTTGCTGAGCGTCTAGTGAAAGACATTGAAAAGGTGATGCACGAGCTGGACATCCTCCCGTCAAGGGCTGATATCAGAGAAGAGACAAACCACGTCGTGGTGGCGAAGAAGAGTGCACTGGAGACACAGAGGGAGATCACCACTGCTTGGAGGAAGTTTGTGATGGATAAGAAGAAGACTAATGGAGTCTGTTAG 1479 47.67 MVLSKTASQSDVSVHSTFASRYVRTSLPRFKMSENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGENETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVDLVDENTICVAAILGSTLNGEFEDVKVLNDLLIEKNKETGWETPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDSSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVKDIEKVMHELDILPSRADIREETNHVVVAKKSALETQREITTAWRKFVMDKKKTNGVC 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17872717 17876820 + Carg18287-RA Car04g02196 147621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02196 492 Gene3D - 66 360 IPR015421 GO:0003824
Car04g02196 492 PANTHER GLUTAMATE DECARBOXYLASE 1 492 IPR010107 GO:0004351|GO:0006536|GO:0030170
Car04g02196 492 Gene3D - 1 65 - -
Car04g02196 492 Gene3D - 361 448 - -
Car04g02196 492 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Car04g02196 492 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Car04g02196 492 CDD DOPA_deC_like 59 439 - -
Car04g02196 492 PANTHER GLUTAMATE DECARBOXYLASE 1 492 - -
Car04g02196 492 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02094 Car-Chr4:17092715 Car04g02196 Car-Chr4:17872717 0 dispersed
Car04g02196 Car-Chr4:17872717 Car15g00821 Car-Chr15:4669021 0 dispersed
Car01g00690 Car-Chr1:4126007 Car04g02196 Car-Chr4:17872717 0 transposed
Car15g00712 Car-Chr15:3952208 Car04g02196 Car-Chr4:17872717 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02196 K01580 - csv:101216119 945.651