Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02199 ATGGCGCGCCGGAATTTGCTTCGGCTGTGTTTGTCATTTTCGGCGCTTGTTGTTTTGTTGTTCTTCCCTACAGGAGCGGCTGACCTTGCATCGGATATGGCGGCGCTGGTGGCGCTTCAGAAAGCGATGGGCGCTCGGAGCCGGACTCGTCAATGGAACCTCTCCGATGAGACTCCGTGTTTGTGGTTTGGTGTTATTTGCGGCGGCGGGAGGGTTACTGAACTGCGGCTTCCCGGTGTTGGACTCTTTGGTCAACTTCCTCTAGGACTTGGAAATTTGACTCATCTGGAAACCCTATCTCTTCGTTCTAACATGCTTTCTGGTTCTATTCCGTCTGATTTTGCGAACCTTCGCTCTCTCCGGAACCTCTACTTGCAACGGAACTCGTTTTCCAGTGAGATTCCTTCTGTTCTCTTCAGTATACAGAGTCTGGTTCGATTGAATTTGGCGCATAACCAGTTCGTTGGTCCGATTTCATCTGTATTCAACAATCTTACGAACTTAGAGGTTCTGAATTTGGAAGGGAATCAACTCGATGGATTCATTCCTGATTTGAACATTCCCTCGCTCAAAACTCTCAACGTTTCTTTCAATCGTCTCAACGGCTCAATCCCTACGCGATTGTCCGATCAACCAGCCAGCGTCTTCGACGGAAACTCACTCTGCGGGAAGCCACTGAGCCCGTGCCAAGGCGAAGAGAAGAAATTATCCACCGCAGCAATCGTTGGTATCGTAATCGGAGGTTCAATTGCATTTTTGATCATCGGTCTGATTTTGATCTTTCTATGTCGTAAAAGGAACAGGATTAACCGGCGGAATGATGCTCAGATGACGACGAGGTCGGAGGTCAGGAATGGCGGTGGAGGAAATGGAGGAATTAGGAATCAGAATGGTTTGGTGTTCTGTGGGAAAGGAGAAAGTGTGTTTGATTTGGAGGAACTGTTGAAGGCTTCTGCAGAGGTGTTGGGGAAGGGAGCTTTTGGGTCAACTTACAAGGCAGCTCTGGATATGGGGATGACCATGGCGGTGAAGAGATTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCATGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCCATTAAAGCTTACTACTATGGCAGGGATGAGAAGCTTCTGGTTTGTGATTATGCCCCCATGGGAAGCTTATCCCTGCATTTACATGGCAACAAGGATTCTGGTAGGACTCCATTGAAATGGGAAGCAAGGGTTGGCATTATGCTCTCGGCTGGTCGTGGCATTTCGTATCTACATTCCCGACGACCTCCGACCTCCCACGGGAATATAAAGCCTTCAAACATTCTTCTCAATAGATCCCACACAGCTTGTGTCTCTGACTTTGGCCTAATTCAGATTGCAAGTCCTACCCCCACTTCAAACCACACCGTAGCCTACCGTGCCCCCGAAGTCACCGATCCACGAAAAGTATCCTTGAAAGCAGATGTTTACAGTTTAGGTGTGGTAATTCTAGAGCTTCTAACAGGAAAGACTCCGAACTCATCAATGCTTAACGACGATGGCGTAGACCTCCCACGATGGGTGAAGTCGAAGGTCAACAAGAAGAAGACAGCAGAAGTGTTTGATGAGGAGCTGTTAGGAAACAAGAATGGGTCGGACGAAATGATTCAACTTCTGAATCTTGCCATGTTGTGTACAGATCCATACCCGGATAATCGCCCTTCAATGGCAAAGGTGACGAGTCGAATCGATGAAATATATCATTCGATCTTACTGAAAGAACAAGAGATGAGCAAGGATAAGTTTTATGATGTGGACAGTGCTGTTTCTCAGCAATTTTACTCGGCTGATTCAATCATGGTTCCACCTTCAATCTAG 1875 47.15 MARRNLLRLCLSFSALVVLLFFPTGAADLASDMAALVALQKAMGARSRTRQWNLSDETPCLWFGVICGGGRVTELRLPGVGLFGQLPLGLGNLTHLETLSLRSNMLSGSIPSDFANLRSLRNLYLQRNSFSSEIPSVLFSIQSLVRLNLAHNQFVGPISSVFNNLTNLEVLNLEGNQLDGFIPDLNIPSLKTLNVSFNRLNGSIPTRLSDQPASVFDGNSLCGKPLSPCQGEEKKLSTAAIVGIVIGGSIAFLIIGLILIFLCRKRNRINRRNDAQMTTRSEVRNGGGGNGGIRNQNGLVFCGKGESVFDLEELLKASAEVLGKGAFGSTYKAALDMGMTMAVKRLRDVKVSEEEFMEKIESLGMMNHQNLVPIKAYYYGRDEKLLVCDYAPMGSLSLHLHGNKDSGRTPLKWEARVGIMLSAGRGISYLHSRRPPTSHGNIKPSNILLNRSHTACVSDFGLIQIASPTPTSNHTVAYRAPEVTDPRKVSLKADVYSLGVVILELLTGKTPNSSMLNDDGVDLPRWVKSKVNKKKTAEVFDEELLGNKNGSDEMIQLLNLAMLCTDPYPDNRPSMAKVTSRIDEIYHSILLKEQEMSKDKFYDVDSAVSQQFYSADSIMVPPSI 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17892052 17894985 + Carg18284-RA Car04g02199 147624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02199 624 Pfam Protein kinase domain 320 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02199 624 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Car04g02199 624 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515
Car04g02199 624 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Car04g02199 624 Pfam Leucine rich repeat 91 129 IPR001611 GO:0005515
Car04g02199 624 ProSiteProfiles Protein kinase domain profile. 316 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02199 Car-Chr4:17892052 Car14g00761 Car-Chr14:4332047 0 dispersed
Car15g00708 Car-Chr15:3936395 Car04g02199 Car-Chr4:17892052 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88839 PF00069 Pkinase 5.10E-36 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02199 - - mcha:111012024 936.021