Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02227 ATGACCGGAAGCGGCGGAAGAGAGGAGAATGGAATCCGCCGGGCGGATTCCAATGAGGAGGAGTATCAGGTGGAGAGCGTTCGTGATCGGATTTCATCGTCGCGAGGGAGTCGATTTAATCTGATTCAGAAACAGTTGAGACTTGAGCCGACTCGCAGACGATTTAGCCGCGAAAATCTCATCAATGGCATTAAATGCCTCGTTATTCTCCCTGACAGCAGATGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAATCTATTCCTCCTTCTTCACACCCATGGAATTTGGATTCTTCAGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGGCAGCTTGCTTTCCTCCTCGACATTGTTTTCCAGTTCTTCGTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCCCTCAAGTACTTGAAATCCACTTTTGTAACTGATTTGCTTAGCTGTATGCCCTGGGATATCATTTATAAGGCTTGTGGGAAGAGAGAGGAGGTGAGATATCTCCTATGGATTAGGCTATTCCGAGTGCGAAAAGTCACAGATTTTTTTCAGACTTTGGAGAAGGATATACGAATTAATTATATGTTCACTAGAATTTTCAAGCTCCTTGTTGTTGAACTTTACTGCACACACACTGCAGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTGCTTCTCAAGAAGGGTACACATGGATTGGAAGCTTAAAATTGGGAGACTATAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACCTCTTTATATTTTGCTATTGTCACCATGGCCACTGTTGGTTACGGAGATATACATGCAGTCAACTTGAGGGAAATGATATTCATAATGATTTATGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGAGATAAAATGACAGATGTAATGAAATACATGAACCGGAATAGACTTAGCAGGGAGATCCGTGATCAGATTAAAGGTCACTTACGTTTACAGTATGAAAGTAGTTACACTGAGGCTACTGTTCTACAGGATATCCCAATATCAATCCGTGCTAAGATTTCCCAAACGTTATACTTGCCTTATGTTCAGAATGTCTCTCTCTTTAGAGGGTGTTCTCCAGAATTCATCAATCAAATAGTTATTAAACTCCATGAAGAGTTTTTTCTCCCTGGAGAGGTGATAATGGAGCAAGGAAATGTGGAGGAATTGGGCATAGGACAAGATGGTTCAGAAGAGACCATATCTTTACTGCAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTGTGTAGGCTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTCGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAGGAATCAAACCTTCGAGTTAAGCAGTTGGAATCTGATATCTCATTTCATATTGGAAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATCTATACCAATTAAAAGGTCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGATCGCCATTGCATCTTGCAGCATCCAGAGGATTCGAGGATATTGTTGGTTTCCTAATACAGGAAGGAGTAAACATTGATCTTAAAGATAACTTTGGCAATACTCCATTAATGGAAGCCATCAAGAACGGAAATGATCAAGTTGCTGTTTTGCTTTCTAAAGAAGGAGCTTCATTGAAGGTTGAAAATGCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGCGATTCAGATCTTCTCAAGAGATTATTGTGCTATGGCATTGACCCCAACTCCAAAGACTACGATTTTCGAACACCATTACATGTAGCTGCTTCAGAAGGGCTGCATTTGATGGCAAAGTTGCTTTTAGAATCAGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGGATTTGTGGAAACAAGAACTTGCTCAAGCTCTTGGAAGAGGCAGAAGCTACTCAGTTGTCAGAAACCCCTTTTTCCTCTCGAGAATTCCCAGCAAAAAAACACACAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGAATCGTGAAGAAAACAAAAGACCTGGAATAGTGCTATGGGTTCCACTCTCTATGGAAGAGCTGATCGAAGTAGCATCCGATCAGCTACAAATTTCAGACAAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCATGATGTTCATATGATTGATGAATGCCAAAAGCTCTATCTTGTTCCTGAAACTCATTAG 2436 41.46 MTGSGGREENGIRRADSNEEEYQVESVRDRISSSRGSRFNLIQKQLRLEPTRRRFSRENLINGIKCLVILPDSRWYRAWTKFILIWAIYSSFFTPMEFGFFRGLPENLFILDIVGQLAFLLDIVFQFFVAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCMPWDIIYKACGKREEVRYLLWIRLFRVRKVTDFFQTLEKDIRINYMFTRIFKLLVVELYCTHTAACIFYYLATTLPASQEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDVMKYMNRNRLSREIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIKLHEEFFLPGEVIMEQGNVEELGIGQDGSEETISLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKESNLRVKQLESDISFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVGFLIQEGVNIDLKDNFGNTPLMEAIKNGNDQVAVLLSKEGASLKVENAGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHVAASEGLHLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNLLKLLEEAEATQLSETPFSSREFPAKKHTKKCTVFPFHPWNREENKRPGIVLWVPLSMEELIEVASDQLQISDKCCILSEDGGKIHDVHMIDECQKLYLVPETH 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18066473 18073459 + Carg18256-RA Car04g02227 147652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02227 811 Pfam KHA, dimerisation domain of potassium ion channel 737 806 IPR021789 -
Car04g02227 811 MobiDBLite consensus disorder prediction 1 25 - -
Car04g02227 811 Pfam Ion transport protein 77 322 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car04g02227 811 Pfam Cyclic nucleotide-binding domain 424 489 IPR000595 -
Car04g02227 811 ProSiteProfiles Ankyrin repeat region circular profile. 562 594 - -
Car04g02227 811 ProSiteProfiles cAMP/cGMP binding motif profile. 424 505 IPR000595 -
Car04g02227 811 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Car04g02227 811 Pfam Ankyrin repeats (3 copies) 632 712 IPR002110 GO:0005515
Car04g02227 811 Pfam Ankyrin repeats (3 copies) 537 624 IPR002110 GO:0005515
Car04g02227 811 ProSiteProfiles Ankyrin repeat region circular profile. 595 626 - -
Car04g02227 811 ProSiteProfiles Ankyrin repeat profile. 562 594 IPR002110 GO:0005515
Car04g02227 811 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Car04g02227 811 MobiDBLite consensus disorder prediction 9 25 - -
Car04g02227 811 ProSiteProfiles KHA domain profile. 738 811 IPR021789 -
Car04g02227 811 ProSiteProfiles Ankyrin repeat region circular profile. 659 691 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02227 Car-Chr4:18066473 Car11g00432 Car-Chr11:2414856 3.72E-123 dispersed
Car06g00769 Car-Chr6:5866479 Car04g02227 Car-Chr4:18066473 0 transposed
Car15g00679 Car-Chr15:3778794 Car04g02227 Car-Chr4:18066473 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02227 K21867 - csv:101210912 1469.91