Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02229 ATGTCGAGGAATGCTAAATGGAAGCTTGAGAAGACAAGAGTAAAGGTGGTCTTCAGGCTTCAATTTCATGCCACGCATATTCCGCAATTTGGATGGGACAAACTATTTATATCTTTTATTCCTGCTGATTCTGGAAAGGCAACAGCAAAGACAACTAAAGCAAATGTGAAAAATGGAGCCTGCAAATGGGCTGATCCTATCTATGAAACAGCTAGGCTTCTTCAAGACACTAGAACAAAGAAATATGATGATAAGCTCTATAAACTTGTGGTGACCATGGGCTCGTCTCGTTCGAGCATTCTTGGGGAAGCTGACATCAATCTTGCTGATTATGCTGATGCATTGAAGCCTTCAGCTGTTGCCCTGCCTCTTAATGGGTGTGAATCAGGAACTATTTTACATGTTACTGTACAGCTTCTTACTTCTAAAACTGGTTTCAGGGAGTTTGAGCAGCAAAGGGAGCTTAGGGAGAGGGGGCTCCCGACGTTCTCCGATCAAAATAGTCATGGTGAATCTCCTAGCGGAAAAGTGTCACTATCCGATGATTCAGTGAATAATCATTCAAATAAGGTCAATGCAAGAATTAGGTCCAAAGAAGTATATAGCGAACTCCCCTTACTTGAAGACAAGGTTGGGCGAAAAGAAGAGTATGCAGATTCAGCAACCGGTTTTGATGGCTCTTCCAATACTTCAGAAAGTCTATATGCTGAGAAACATGAAATTGACAGCATAAAGAGCACAGTATCTGGTGATCTAGGTGCCATTTCCACTGGCCAAAGTCCTGGGTCAGAGAAAGGAGACCAGGGTGATCATCAATATTCAGTGCAGGGATCCAATAAATGGGCTCATAACTGGGGTTCTGACTATGCTGCTGATGGTGAACTGGCTGCTGTATATAAAGAAAATCATAGACTTAGAGAAAGCTTGGAAGTCGCCAATTCCTCGATTGTTGAGTTGAAGCTAGAGGTAAGCACTCTGCAAAATCATGTCGATGATATGGATGTCGAAACACAAAAATTTGCTTGGCAGCTTGCTTCTGAGACTTCTTCAGGTAAAGAACTGACAGAAGAAGTTTCAGTATTGAAATCCGAGTGTTTAAACCTTAAAAACGAGCTCGAGAGATTAAAAAATTTGCAATCAAGTCTTTCAGAATCTAGAAAAGAAATTGTGGAGAGTGACCAGGATAACTTATCCCAAAAGTTAGAGCTAAAATGGTTAAAGGGGCTCTTAACAATGGAGGAAAAGATTAGAGATATACTAAATAAGGCTCACTTTGGATGTCAAGACAGAGATGTTCGGTTTCTTCTGGCCGACTTGGAGGCCTTGCTCTGCTTTCTACAAGATTTCAGAGAACGAACGGAACAGGAAATTTCATGTGTCAAAGCAAACCAAAATGAGATCCGAAAGTTAAACTCCCCGATATTGGCATCGGGAACTGGGTTCGATTCAGACATTTACCACACTGATAGCATGCTTCATTGTCTTATACCGGGTCTGGTGTCGTACGAGCCCAATTCTATAGATGCCTTCAGTTCAATGAAAGGGAAAATTTTTGAACTTCTAAGGGAGTTGGACGAGTCAAAAGCGAAACAGGAAAGCCTTGCACAGAAAATGGACCAAATGGAATGCTATTATGAAGCTTTTATCCATGAACTTGAGGAAAATCAGAGACAGATTATTGGAGAGCTGCAGAATCTCAGAAATGAGCATGCAACATGTATATATACTATCACGGCTTCTAAGGATGAAATAGAAGCCCTGCATCATGAAATGAATAACCATTTAATAAAGTTTGCTGAAGACAAGAAGAGCTCAGATTTCATCAATAAGGAGCTTGAAAGGAGGGTTTTTAGTGCTGAGACAGCTCTCAAAAGGGCACGCTTAAACTACTCAATTGCCGTGAATCAGCTACAGAAGGACCTCGATCTACTATCCGTCCAGGTGACATCCATGTATGAAACTAATGAGAACCTCATTAAGCATGCACTTACTGGTTCTTCACTTCCAAGTAGTCGAGAATACTGTGAAATAGGTTTGAATCCAAAAGTCGAATTGGAGGAAATTTCTACTGGAAAACTCTTGCAGTGTCGGAATCATGATTCAGGGGTGAAGAAATATCATTTTACGGGCGGTATTTTCTCTGAAGACTTGAAAAGGTCTCTCTACTTGCAGGAAGGGCTGTATCAAAAGGTTGAAGATGAAGTCTTTGAAGTGCATTTAGTAAACATACACCTGGATATATTTTCAAAGACGCTGCAAGAAACGTTGCTTGAGGCGAGTACTGGTTTTCGACTTATGAAAGAGAGAATGAATGAGATTAGTCAGCAGCTGGAACTATCAACCAAGTCCAAGGAATTATTGTTTCTTGAACTGCAAGCTTCTTTGGAAGAGATTGATTCTCTTAATAAATATAAAACTGCGATCGTTGCAAAATACAATGAAATGGAATCGAAGACTGAAGTTTTAGAAGAAAATTTATTAAACGTTACTCGTGAAAATTCCTTGCGGGCCAAGAAAATGGCAGAATGTGAGGCCTTGATGACAGAATATAGAACTTTTGAGAAGAAGTATCAGACTTGTCATATGGAGAAGTTAGAGCTGGAAAATTCAATGATGGAGAAAAGCTTTGAAAACGAAGAACTTCGTAACGAGATTTCTTCTTTGCACAAAGAATTCAAAGCTCATAGAGTTGAATTCGACAACCTCGTTTCAGTGAAGGAGGATCTGCATAATATTGTTGATTTTGCTCATGATAAGTTGAGTAACTTATTGGCTTCCTGTGACAAAAACTATAAGAATCTCTTTACCTTAGGTGATTCTGTTCATGATGATTTGGATTCAAAGAGCTTAGCAGGCATGGTTTCGCAGTTCGAAAATCTCCATCTTGATGCATGCAAGAAAGTTCTTCAGCTAATGAACGAGAACGAGCGTCTAATGGAAGAAAGAGATATGGCTCAAAAGTCCTTGAGCATAGCAGCATCAGAGAATCTAATCATGAAAGAGAATCTTGAACGTGTAAGACAAGACACGGTCAACCGATTGGATAAGGCGAATGAGCTAGTGCAGAAGTTTCATATAGCAATGGAGACTGTTTCTGAAAACATTAATTGCAGTGAAGCTGGAGATAAATTTACCCAGCAGCATAAAGAACTTCTGTCTGTTCTCGATCATGTTGAGGATGAACTCGAACAACTGACTTCTAAAAACGATGGGCTTGAAAATGAAATGATGGCACTGAGATTGGTAGATGAAGAACTTGGAAATTGTAAGTTTACGATCGAGCTCTTAGCTAAGGAGAAAAACGCTCTAGTTGAGTCATTACATGAAAAAGTAGAGGAATCAATGAAGCTTAAGTTAGAGCTGGATCGTTCAAAAGATAATTCTGAATCAGAGAAAAGTTTGAGAAATAGTATGGAGAAAAGAATTAAAGATCTCGATGATCATTTTGAGAAAACGAAGGCCGAAGTTGGAAGTCTCAAGCGATTGGTATCGAAGCTCGAGTCGGAGAAATCAAGACTCAACAAAGATTTACTACGGTCTGAGGAACTGCTTAAGCGCTTCGATCAAGAAAACTCTTCCTTGGTTTGTTTGGAAAGTGAATTATGTGAAATGCATGAATTTTCAATAGCTGCAGATGTTAGCCTAGTTTTCACAAGGTCTCAGTATCAGAACCATCTTGAAAATCTTGTTCAGAAACTTGTGTTATCAGAAACCGAGTTAGAAGCTTTCGCTTTGGAAAACAAAACGCTTCTTGATGCAAACAAAAAAGTGACGATTCAGTCCGAGGAATTACGAAACCGGACTAAAATTTTGGAGGTTGCAGCTGATGCTGATAGAACGCATCATGCTCAAGAGATTGAAAAACTGGGGAAAAAGTTGAAGACTTATGAAACTGAGATTCATGATTTGTTGCTTTGTAAGGAAGAACTGGAAGTAAGTTTGTTGGTTGTCCGATCGAAATTGGACGAACAGCACGCTCATATAATCATGCTCGAAGGTATGAGCGACGAGATGGTAATCTTGCAAAATAAGTGTAATGATCTAACCCAGAGGCTTTCTGAACAAATCTTGAGAACAGAAGAATTCAAGAACTTGACTACTCACTTGAAGGATCTAAAAGACAAGGCCGACGCAGAATGTCGACAACTTCGTGAAAAGAAAGAGAACGAAGGGACATCGAATTCCATGCAAGAGTCTCTTAGAATTGCATTCATCAAAGAGCAATACGAAACGAAGTTGCAGGAATTGAAGCACCAGCTCTCTGTGTCCAAGAAACACAGTGAAGAAATGCTGTGGAAGTTGCAAGATGCAATAGATGAAGTCGAAAATAGGAAAAGAACTGAAGTTTCTCACATAAAACGAAACGAAGAGCTCGGAAATAAGATCCTGGAGCTGGAAGATAACTTGAATGCAGCTGTTTCCGAAAAGCGGGAAATAACGAAGGCGTATGATTTGGTGAAGGCTGAAAAAGAATGCTGTTCTATTAGCCTTGAATGCTGCAAGGAAGAAAAACAAGAGCTTGAAGATTGTTTGAAGAAATGTAATGATGATAAACTAAAATTTTCAATGGAACTGAACCTAATGAAAGATTTACTGGAGAGTTACAAAATGTCCTCAGACCAAGAAAATGCAGCTCCTTGTGAAGAAGCGGAATGCACAAGATCGGTTTCAGCTGATGAGACCGATAATTCACAAGCTTTCGTCAATGGTCGAGGGCGACCCGAGCAGAATGTTCAGATGTTGAGAAGTGTCGACGGGCTCCAAGATGGCTCTCCTGGCAATCAAGATGGCTCACTGCATGATGAGACAAAGCATTTAGCTCTGGTAAATGATAACTTCAGAGCTCAAAGCTTGAAATTTAGCATGGATCACCTAAATGAAGAGTTGGAAAGATTGAAAAACGAAAACTCGCTTGTGCCTGATGATCATACTTCTGAGGCGGATTTTCCTGGTTTAGAATGTCAACAGATGCAGTTACATAAGGTGAACGCAGAACTAGGAAGCATATTCCCTCTGTTCAAGGAGTTTTCGAGCAGTGGCAATGCTTTAGAACGGGTACTAGCTTTGGAGATCGAGCTCGCTGAAGCGTTGCGAGCTAAAAAGAAACCGAGCCTACATTTTCAGAGTTCTTTCTTGAAGCAACACGGCGATGAAGAAGCGATATTCCGAAGCTTTCGAGACATCAATGAGTTAATCAAAGACATGTTAGATCTAAAGGGAAAGTACACAACTGTCGAGACTGAGCTGAGAGAGATGCATGACCGTTACTCCCAATTAAGCCTTCAGTTCGCAGAGGTTGAAGGGGAGAGACAGAAGCTCATGATGACCGTCAAGAACGTCCGAGTGTCCAGGAAGCTTCTAAATGCCAATAATCGACCCTCGTGGTCGTCCCGAGAGGAGCATTCTCCTTCGTAG 5415 40.5 MSRNAKWKLEKTRVKVVFRLQFHATHIPQFGWDKLFISFIPADSGKATAKTTKANVKNGACKWADPIYETARLLQDTRTKKYDDKLYKLVVTMGSSRSSILGEADINLADYADALKPSAVALPLNGCESGTILHVTVQLLTSKTGFREFEQQRELRERGLPTFSDQNSHGESPSGKVSLSDDSVNNHSNKVNARIRSKEVYSELPLLEDKVGRKEEYADSATGFDGSSNTSESLYAEKHEIDSIKSTVSGDLGAISTGQSPGSEKGDQGDHQYSVQGSNKWAHNWGSDYAADGELAAVYKENHRLRESLEVANSSIVELKLEVSTLQNHVDDMDVETQKFAWQLASETSSGKELTEEVSVLKSECLNLKNELERLKNLQSSLSESRKEIVESDQDNLSQKLELKWLKGLLTMEEKIRDILNKAHFGCQDRDVRFLLADLEALLCFLQDFRERTEQEISCVKANQNEIRKLNSPILASGTGFDSDIYHTDSMLHCLIPGLVSYEPNSIDAFSSMKGKIFELLRELDESKAKQESLAQKMDQMECYYEAFIHELEENQRQIIGELQNLRNEHATCIYTITASKDEIEALHHEMNNHLIKFAEDKKSSDFINKELERRVFSAETALKRARLNYSIAVNQLQKDLDLLSVQVTSMYETNENLIKHALTGSSLPSSREYCEIGLNPKVELEEISTGKLLQCRNHDSGVKKYHFTGGIFSEDLKRSLYLQEGLYQKVEDEVFEVHLVNIHLDIFSKTLQETLLEASTGFRLMKERMNEISQQLELSTKSKELLFLELQASLEEIDSLNKYKTAIVAKYNEMESKTEVLEENLLNVTRENSLRAKKMAECEALMTEYRTFEKKYQTCHMEKLELENSMMEKSFENEELRNEISSLHKEFKAHRVEFDNLVSVKEDLHNIVDFAHDKLSNLLASCDKNYKNLFTLGDSVHDDLDSKSLAGMVSQFENLHLDACKKVLQLMNENERLMEERDMAQKSLSIAASENLIMKENLERVRQDTVNRLDKANELVQKFHIAMETVSENINCSEAGDKFTQQHKELLSVLDHVEDELEQLTSKNDGLENEMMALRLVDEELGNCKFTIELLAKEKNALVESLHEKVEESMKLKLELDRSKDNSESEKSLRNSMEKRIKDLDDHFEKTKAEVGSLKRLVSKLESEKSRLNKDLLRSEELLKRFDQENSSLVCLESELCEMHEFSIAADVSLVFTRSQYQNHLENLVQKLVLSETELEAFALENKTLLDANKKVTIQSEELRNRTKILEVAADADRTHHAQEIEKLGKKLKTYETEIHDLLLCKEELEVSLLVVRSKLDEQHAHIIMLEGMSDEMVILQNKCNDLTQRLSEQILRTEEFKNLTTHLKDLKDKADAECRQLREKKENEGTSNSMQESLRIAFIKEQYETKLQELKHQLSVSKKHSEEMLWKLQDAIDEVENRKRTEVSHIKRNEELGNKILELEDNLNAAVSEKREITKAYDLVKAEKECCSISLECCKEEKQELEDCLKKCNDDKLKFSMELNLMKDLLESYKMSSDQENAAPCEEAECTRSVSADETDNSQAFVNGRGRPEQNVQMLRSVDGLQDGSPGNQDGSLHDETKHLALVNDNFRAQSLKFSMDHLNEELERLKNENSLVPDDHTSEADFPGLECQQMQLHKVNAELGSIFPLFKEFSSSGNALERVLALEIELAEALRAKKKPSLHFQSSFLKQHGDEEAIFRSFRDINELIKDMLDLKGKYTTVETELREMHDRYSQLSLQFAEVEGERQKLMMTVKNVRVSRKLLNANNRPSWSSREEHSPS 1804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18078153 18085717 + Carg18254-RA Car04g02229 147654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02229 1804 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 140 IPR019448 -
Car04g02229 1804 Coils Coil 1497 1517 - -
Car04g02229 1804 MobiDBLite consensus disorder prediction 249 275 - -
Car04g02229 1804 Coils Coil 1406 1444 - -
Car04g02229 1804 Coils Coil 1455 1482 - -
Car04g02229 1804 Coils Coil 609 629 - -
Car04g02229 1804 Coils Coil 1048 1082 - -
Car04g02229 1804 Coils Coil 812 832 - -
Car04g02229 1804 Coils Coil 1369 1389 - -
Car04g02229 1804 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Car04g02229 1804 Coils Coil 1135 1190 - -
Car04g02229 1804 Coils Coil 517 537 - -
Car04g02229 1804 Coils Coil 1615 1635 - -
Car04g02229 1804 Coils Coil 549 569 - -
Car04g02229 1804 Coils Coil 302 322 - -
Car04g02229 1804 Coils Coil 1000 1020 - -
Car04g02229 1804 MobiDBLite consensus disorder prediction 158 191 - -
Car04g02229 1804 MobiDBLite consensus disorder prediction 161 191 - -
Car04g02229 1804 Coils Coil 968 988 - -
Car04g02229 1804 Coils Coil 862 898 - -
Car04g02229 1804 Coils Coil 1331 1351 - -
Car04g02229 1804 Coils Coil 351 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02229 - - - cmos:111458023 3348.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02229 Car-Chr4:18078153 Car16g00527 Car-Chr16:3353284 3.63E-10 dispersed
Car15g00678 Car-Chr15:3765511 Car04g02229 Car-Chr4:18078153 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g355 . . . . . . . . Cmo04g02413 . . . . . . . . . . . . . . . . . . . . . . Cone4ag1360 Cone7ag1573 . . . . . . . . . . . . . . . . . . . Car04g02229 . Cpe01g02004 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005592 0 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02229 Car_Chr04 FPKM 6.790732 7.869537 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0