Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02252 ATGGCGGCTAACGGTTCCATCAGAAGTTCCGTCAAGGTACAATGGGAAGAGGAAGGCGAGGATGAGATCAACGACTTTCGTGAATTGATCCAGAAAGGAATCCGTGAATTAGAGCCGTCGATTCTCGACCCCAGACACGAGGGAACGGCTGATGATTGGATCGAGCGGAATTCTTCCATGGTCCGTCACACAGGAAAGCACCCTTTCAACTCGGAGCCGCCAATCAACCGTTTAACGCACTACGGCTTCATCATTCCGGTCCCACTCCACTTTGTTCGCAGCCGTGGCGCGGTCCCCAAGGCTACGTGGAACGACTGGACCGTTGAAGTATGTGGGCTCGTCAAACGGCCCACTAAGTTCACCATGGACCAATTGAGTAACGAGTTTGGGTTTCGGGAGTTTCCGGCGACGATTGTCTGCGCCGGCAACAGGCGGAAGGAGCAGAACACGGTGAAACAGACAATTGGGTTTAATTGGGGAGCGGCGGTGGTTGCCACGTCGGTCTGGGGAGGGGTCCCACTTCGTGACGTGTTGAACCGATGTGGAATTTTTAGCCGGAAGAATGGGGCGGTGAATGTATGCTTTGAAGGGGCGGAGGACTTGCCGGGAGGCGGTGGGTGTAAGTACGGGACGAGTATAAAAGTGGAGTTCGCCATGGATCCGGCGAGGGATATAATTTTGGCGTATAGACAAAACGGGGAGGAATTGGCGGCGGACCATGGTTTTCCGGTGAGGATGGTAATGCCGGGATTCATCGGAGGTAAAATGGTGAAGTGGCTGAAACGGATCATTGTGACGACCATAGAATCGGAAAGTTATTATTATTTAATGGACAATAAAGTTTTTCCATCCCACGTGGACGCTGAGCTGGCCGACAGAGAAGGGTGGTGGTATAAGTCGGAGTATGTAATCAACGAGTATAACATTAACTCGGTCATAACCACGCCCGGCCACAACGAAATTTTGCCCATCATGCCCTGCAGAACTCGGTCGTCCTACATCTTGAGAGGCTATGCTTATTCTGGTGGTGGAAAGAAGGTTACACGTGTGGAGGTGACAATGAACGACGGAGAGACATGGGACATGTGCATGTTGGATCATCCGGCCAAGCCGAATAAGTTTGGAAAGTACTGGTGCTGGTGTCTATGGTCGTTGGAGGTGGAGGTTTCGAAGTTGCTTAATGCCAAGGAGATCGCCGTCCGAGCTTGGGATGAAACTAATAACACCCAGCCCGAGAAACTCATATGGAATCTCATGGGATTGATGAACAACTGTTGGTTTAGAGTAAGAACGAAGATGTGCAAACCCGACAAGGGAGAGACTGAAATCATCTTCGAACACCCGACAATCCCCGGCAACCAGTCGGGCGGATGGATGAAGAGCAGCGCCTCCGCTCCTTCCACGAACAGCGCCTCCACCACCTCCACCACCTACTCCTTATCGGAAGTCAAAAAACACAACACCCGTGAGTCCGCCTGGATTATCGTCCACGGCCACGTCTACGACTGTACCCAATTCATCAAACACCACCCCGGCGGCGTCGATAGCATCCTCAGCCACGCTGGCACCGACTGCACCGAAGTATTCGACGCCATCCACTCCGGCAAAGCCAAGAAAATGCTCGAAAATTACCGAATCGGAGATGTTCGTGGTGAATGCGAATCGGACGGAGGAGGATGTCTTGCTGAGGGAGAAGATGGACACGTGGACGGTCAAGAAGGAGAGATTGAAAGTTCGAGACCATATTCCGGCGGCGGCGGAGGAGGATACTTTGGGCCGCCGGCGATGGTTCAGCTGGCAGTGCAGCCCAATTTGGAGAAGATGAATAACGACACCAAAAACTAG 1845 52.52 MAANGSIRSSVKVQWEEEGEDEINDFRELIQKGIRELEPSILDPRHEGTADDWIERNSSMVRHTGKHPFNSEPPINRLTHYGFIIPVPLHFVRSRGAVPKATWNDWTVEVCGLVKRPTKFTMDQLSNEFGFREFPATIVCAGNRRKEQNTVKQTIGFNWGAAVVATSVWGGVPLRDVLNRCGIFSRKNGAVNVCFEGAEDLPGGGGCKYGTSIKVEFAMDPARDIILAYRQNGEELAADHGFPVRMVMPGFIGGKMVKWLKRIIVTTIESESYYYLMDNKVFPSHVDAELADREGWWYKSEYVINEYNINSVITTPGHNEILPIMPCRTRSSYILRGYAYSGGGKKVTRVEVTMNDGETWDMCMLDHPAKPNKFGKYWCWCLWSLEVEVSKLLNAKEIAVRAWDETNNTQPEKLIWNLMGLMNNCWFRVRTKMCKPDKGETEIIFEHPTIPGNQSGGWMKSSASAPSTNSASTTSTTYSLSEVKKHNTRESAWIIVHGHVYDCTQFIKHHPGGVDSILSHAGTDCTEVFDAIHSGKAKKMLENYRIGDVRGECESDGGGCLAEGEDGHVDGQEGEIESSRPYSGGGGGGYFGPPAMVQLAVQPNLEKMNNDTKN 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18209258 18211488 + Carg18231-RA Car04g02252 147677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02252 614 Pfam Cytochrome b5-like Heme/Steroid binding domain 479 549 IPR001199 -
Car04g02252 614 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 506 513 IPR018506 GO:0020037
Car04g02252 614 MobiDBLite consensus disorder prediction 564 588 - -
Car04g02252 614 Pfam Mo-co oxidoreductase dimerisation domain 302 432 IPR005066 GO:0016491|GO:0030151
Car04g02252 614 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 112 147 IPR022407 GO:0043546
Car04g02252 614 Pfam Oxidoreductase molybdopterin binding domain 96 274 IPR000572 -
Car04g02252 614 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 475 550 IPR001199 -
Car04g02252 614 MobiDBLite consensus disorder prediction 454 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02252 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101219000 879.782
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02252 Car09g00590 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02252 Car-Chr4:18209258 Car15g00657 Car-Chr15:3648196 0 dispersed
Car15g00656 Car-Chr15:3634989 Car04g02252 Car-Chr4:18209258 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02252 Car_Chr04 FPKM 14.585931 13.177608 12.97271 16.352373 14.315218 19.3613 17.731213 22.882145 27.262955 22.649227