Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02258 ATGCATTCTTTCTGCTGTGTCTCTACTGTCTCTGATAACTCTCCGTCCAAGAAACCGCCGTATCCGATGCCCGACCTTCATATTCCACCGGCTTCTCCTGCAGTTTCTGTCGCGTCCAGATCGGATCCGACGATTCGGATTTCTCATAATCGGAGTCTTAGTAGTAGCGATGCGGGACGGCTTAGCCATCGGAGTATTTTTGCTGCTGAGATGGTTGCACGGCATTCCTCCTTTAGGGAGCCTCCGGTTGACGTTAAGATCAACGATATTGTTGGGAATGGTATTTGTGGTATACTCTATAAGTGGGTGAACTACGGGAAAGGTTGGCGTCCACGCTGGTTTGTGCTTCAGGATGGCGTTTTGTCCTACTATAAGATTCATGGACCTGATAAGATCGTTGTCAATGAGGAAACAGAGAAGGGATCGAAGGTGATTGGCGAGGTGTCAATGAGGAGGATTGCGAGACATAAGAACGGGTTCTCTAATCATACCACCCAGTTCCCACTCAGGCGCAAGCCGTTTGGGGAAGTTCATCTCAAGGTTTCCTCAATTCGAGAAAGCCGATCAGATGATAAGAGGTTTTCCATCTTCACTGGGACAAAGAGACTTCACTTGCGTGCGGAGACCTGCGACGATCGGTTGGCATGGATGGATGCATTGCAGGCAGTGAAGGAACTATTCCCAAGGATGTCGAACAGCGAGCTCATGGCGCCTAAGGACTTCTTGTCTGTGTCAACAGACAGGATTAGAAAGCGGCTTTTAGAAGAGGGTGTCAATGAAACAGCTATTCAGGACACTGAAAACATTATGAAGAGTGAGTTTGCTGCATTGCAAAACCAGCTCTTGTTGCTCAAGCAAAAGCAGTGGCAACTTATTGACACACTGCGGCACTTAGAGACAGAAAAGGTTGACTTGGAGAATACAGTAGTTGATGAGAGCCAGAGACAGTTCAATGAGCCAGGGGCTTTGCCTGGTCCGCTGGAAAAGTACAGTGATGCAAGTGCAAGTGTAACTGAATCTGATGATGACAATGAGCGAGTTGATGCTGCAGAGGAAGAAACAGATGATGATGAGAACACTTTTTTTGATACGAGAGATTTTTTATCGTCAAGTTCGTTCAAAAGCAATGGATCTGTCAGGATATCATCTTTTTCTTCGGATGAAGGCATTCGTGCAGTTGGTTCTGAGGAAGAGGTGGATCCATCAATTAGGTCTGTTGGAACTAATTATCCACATGTTAAGCGGCGCAAGAAATTACCTGATCCAGTTGAAAAGGAGAAGGGTGTTAGCCTTTGGTCAATGATTAAAGATAACATTGGAAAAGATCTCACCAAAATTTGTCTCCCTGTTTTCTTCAATGAGCCTCTTTCTTCCTTGCAAAAGTGTTTTGAAGATTTAGAATATTCTTACCTTATTGATCGGGCACATGAGTGGGGAAGAAGGGGTGATAGCCTCATGAGGATTCTTAACGTAGCTGCATTTGCTGTATCTGGATATGCTTCAACAGAAGGAAGAATTTGCAAGCCATTTAACCCACTGTTAGGGGAAACTTATGAGGCTGACTATCCTGATAAAGGTCTCAAGTTTTTCTCCGAGAAGGTTAGCCATCATCCAGTGGTAGTTGCATGCCATTGCGAGGGTAAAGGGTGGAGATTTTGGGGGGACAGCAATTTGAAGAGCAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTTGGTCAGTTAACTTTAGAATTTGATGATGGAGAAGTCTATCAGTGGAGTAAGGTGACGACGTCAATTTACAATCTAATACTGGGGAAGCTGTACTGCGATCATTATGGTACAATGCGTATAGATGGAAATCGTGAATACTCGTGCAAGCTAAAATTCAAGGAGCAGTCCATTATTGACAGGAATCCACACCAGGTTCAGGGTGTAGTTCAAGATAGAAATGGAAAAACGGTGGCTACATTATTTGGAAAATGGGATGAGAGTATGCATTATGTCAATGGGGACTGTTCTCGGAAGGGAAAAGGATTTGATTCATCTGAACCCCACCAACTCTGGAAACGAAGCAAGCCACCTAAATTTTCTACTAGATATAACTTCACGCCTTTTGCTATGACTTTGAATGAATTGACACCAGGCTTGAAGGAAAAGTTGCCTCCTACAGATTCAAGGCTCAGACCTGATCAGAGGTTTTTGGAAAATGGAGAGTACGAAATGGCTAACTCGGAAAAGTTGCGATTGGAGCAGCGCCAACGACAGGCACGGAAGATGCAAGAGCGAGGTTGGAAACCAAGGTGGTTTGCCAAGGATAAGGGAACCGATACATATCGCTACATTGGCGGGTACTGGGAGGCCAGAGACAATAGCAAATGGGACTCATGCCCGGATATATTCGGTCAGATTCCTACTGATCCACAACTCGACTGA 2418 45.04 MHSFCCVSTVSDNSPSKKPPYPMPDLHIPPASPAVSVASRSDPTIRISHNRSLSSSDAGRLSHRSIFAAEMVARHSSFREPPVDVKINDIVGNGICGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNEETEKGSKVIGEVSMRRIARHKNGFSNHTTQFPLRRKPFGEVHLKVSSIRESRSDDKRFSIFTGTKRLHLRAETCDDRLAWMDALQAVKELFPRMSNSELMAPKDFLSVSTDRIRKRLLEEGVNETAIQDTENIMKSEFAALQNQLLLLKQKQWQLIDTLRHLETEKVDLENTVVDESQRQFNEPGALPGPLEKYSDASASVTESDDDNERVDAAEEETDDDENTFFDTRDFLSSSSFKSNGSVRISSFSSDEGIRAVGSEEEVDPSIRSVGTNYPHVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKICLPVFFNEPLSSLQKCFEDLEYSYLIDRAHEWGRRGDSLMRILNVAAFAVSGYASTEGRICKPFNPLLGETYEADYPDKGLKFFSEKVSHHPVVVACHCEGKGWRFWGDSNLKSKFWGRSIQLDPVGQLTLEFDDGEVYQWSKVTTSIYNLILGKLYCDHYGTMRIDGNREYSCKLKFKEQSIIDRNPHQVQGVVQDRNGKTVATLFGKWDESMHYVNGDCSRKGKGFDSSEPHQLWKRSKPPKFSTRYNFTPFAMTLNELTPGLKEKLPPTDSRLRPDQRFLENGEYEMANSEKLRLEQRQRQARKMQERGWKPRWFAKDKGTDTYRYIGGYWEARDNSKWDSCPDIFGQIPTDPQLD 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18231371 18239045 - Carg18225-RA Car04g02258 147683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02258 805 Gene3D - 726 790 - -
Car04g02258 805 Coils Coil 734 757 - -
Car04g02258 805 MobiDBLite consensus disorder prediction 311 358 - -
Car04g02258 805 Coils Coil 295 315 - -
Car04g02258 805 Pfam Oxysterol-binding protein 430 783 IPR000648 GO:0008289
Car04g02258 805 SUPERFAMILY Oxysterol-binding protein-like 425 799 IPR037239 -
Car04g02258 805 Pfam Pleckstrin homology domain 96 221 - -
Car04g02258 805 SMART PH_update 93 227 IPR001849 -
Car04g02258 805 CDD PH_ORP_plant 95 232 - -
Car04g02258 805 ProSiteProfiles PH domain profile. 92 225 IPR001849 -
Car04g02258 805 MobiDBLite consensus disorder prediction 344 358 - -
Car04g02258 805 Gene3D - 516 688 - -
Car04g02258 805 SUPERFAMILY PH domain-like 95 230 - -
Car04g02258 805 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 4 799 - -
Car04g02258 805 Gene3D - 93 227 IPR011993 -
Car04g02258 805 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 799 IPR000648 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02258 K20456 OSBP; oxysterol-binding protein 1 - csv:101214552 1458.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02258 Car15g00652 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01807 Car-Chr4:10489551 Car04g02258 Car-Chr4:18231371 0 dispersed
Car04g02258 Car-Chr4:18231371 Car06g00687 Car-Chr6:4109799 0 dispersed
Car15g00652 Car-Chr15:3598111 Car04g02258 Car-Chr4:18231371 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g320 . . . . . . . . Cmo04g02445 Cmo15g00720 . . . . . . . . . . . . . . . . . . . . . Cone4ag1377 Cone7ag1554 Cone17ag1264 Cone20ag0464 . . . . Blo17g00190 Blo18g00195 . Bda13g01496 Bpe02g01623 Bpe14g00370 Bma01g00837 Bma02g00235 . . . . . Car04g02258 Car15g00652 Cpe01g02027 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004129 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02258 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 3.352481 2.190436 2.048936 0.079167 0.0 0.0