Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02260 ATGGACAGGGAGGCTAACCTTCCGGTCCCGTCCGAACTTGCGAAGAAAGTGAGCCGTCAGACCATCCCGGAAACTACGTCGTCGTCTTCATCCTCATTTTCTTCTTCCTCGCCGCCGGACTTCCTTCGACATGTTCAAGCTGCATTCAAGCGCCATCGACCACTTGGTGTGACGCAGACAAATAGTATAAGACCCAGGCGCTTGTTAGTTCCCCAAAGAGAGGTGTCAAGGAACCCTCGTTCGCAGGCTGGGCTTGCAGAGAATGTTAAGGAGCCTCAAAATGAAGTTTCATTGAATCAAAATCATGCAGTGAAGGATTTGATTGAACAGACGAAGAGCACAATGACTATTATTGGAGAAACTCCAGATGAATCAGTAACACCGCCTTCTATTTCAGGCCTGATGACCAAAAGCTTTGATGGAAGTTTCGCACCTGATGCCCACAGAGATGAACTTGTGCATGGTGCTGGTTGTCAATCAAGGAATGTGTCGTCCGCTTTAAATGCAGGATCCCAGCATGTTGATGGCCAAAAAATGGTTCGGTTTTCTGTTAACAGCAACAAGACATCTCAGGGGGCCCATGATCTAATGGCCTGTGGAGTGGAAAACTTATCATCTCATATGGGTTCACTTGCATTGACAGAGATGGATTGGATAGCCGGCAATCAAGGAGAAGTTTCTACCGTAATAAATCATGATGAATCTAAGCACCGAAATTTTTCGAACACAGAGTGTGAAATGAACATGAAGAACAATGGTGGGATTTCGATGCTGGCACAGAGAACACCAGCTATGGAAGATCAACTCAAGCGATTCGGAGACTTTTTGGCTCAACCTGTTAGTCAGCCTTCATTTGGACCATCTTATGCAACCACCACGTCAGTTCACTCGAGTTCAGTGCCTATGCTCAATTCAACGACCTATTGCTCTCATTTGCATCAAGAAGGTGTTGGTAATATTGCTACCGAACCTTTGAGTGGCTTTAGTGCAAATATTCAACATGAAGCTAAAAGAAATGTGATGCCAACATCAGGGTCTTCTCTAAAGGACATTAGTGGTGAGGACAAGAATGGGAAAGGCAATGATGACATACATGCTCTTAGCCGTGCTGTCGATACTGAAAAAGTTAGAAGGCAAAATGACATCTCTCATGAGCAAAGGGGAAAGTTAACTAGAGAAAGTGATATTCCAAAACATGCTTTGCAACATAATGATAAACCATATGAAGGCAAAGGTTTCATAGGGGATGCCATGGATACAAAATCAAAAGCCCAAGTACCCAAAAAGTCAGTTTCTGATGTGAATTTGGATCCTTCTGGTTCAGAGAAACAAGAAAAAGTGGCAAGTGGGAAGAGCAGTTCAACAATTCGTAAGAGGAATTATGATCCAGACTTGTTTTTTAAGGTTAATGGAAAGCTTTATCAAAGACTTGGCAAGATAGGCAGTGGAGGAAGCAGTGAGGTTCACAAAGTCATCTCATCAGATTGCACGATATATGCACTTAAGAAAATTAAACTTAAAGGTCGTGATTATGCCACTGCTTATGGGTTCTGTCAGGAAATTGTGTATTTAAATAAGTTGAAAGGGAAGAACAACATTATACAACTTGTAGATTATGAGGTAACGGATAGGACTTTACTTCAGGAAGTATTGAATGGCTCCACGAATAATAAAGATGCTAGGGTCAAAGATGACGGATATATATACATGGTGCTAGAGTATGGTGAAATTGATTTGGCTCACATGCTCTCACAGAAATGGAAGGAAATTGACTCGGATCAGATAATAGATGAAAATTGGCTTCGATTCTATTGGCAGCAAATTCTTCAAGCTGTAAACACAATACACGAGGAACGCATAGTTCACTCTGATTTGAAGCCAGCAAATTTTCTTCTTGTCAAAGGCTCCTTAAAACTAATTGACTTTGGTATTGCAAAAGCCATAATGAGTGATACAACCAACATCCAAAGGGATTCACAGGTGGGTACACTGAGTTACATGTCACCTGAGGCATTTATGTGCAATGAGAAAGATGCAAATGGAAACACCATCAAGTGTGGTCGACCATCTGATATTTGGTCCCTTGGCTGCATTCTTTATCAGATGGTTTATGGGAGGACCCCCTTCTCCGAGTATAAGACGTTCTGGGCTAAGTTCAAAGTTATTACAGACCCAAATCATGAGATTAAATATGAACCCATTGGTAACCATTGGCTTGTTGATCTAATGAAGAAGTGCCTTGCATGGGACCGCAATGAGAGATGGAGAATTCCTCAGTTACTTCAACATCCTTTTCTCGTACCCCCAGTCTCCCCACACCTATCCTTATCTCAACACCAGAGTTCCAAACTTCTGCAACTCATTGCAGAAACTTGTGAAAATGACCAGGAAGCCTCATATCTATGTTCTCAGCTTCAACAACTGCTCATTAACTCCGTGCAGCCGGTGACATCTCTCTTAATAACTTCTAAAGACGATCAAAGCGAGCTATTTTCCCAAACGTCAAAGAACTTTTTTCTGCAACACAAAAATCTAGCTACTCAAAGATGA 2550 42.08 MDREANLPVPSELAKKVSRQTIPETTSSSSSSFSSSSPPDFLRHVQAAFKRHRPLGVTQTNSIRPRRLLVPQREVSRNPRSQAGLAENVKEPQNEVSLNQNHAVKDLIEQTKSTMTIIGETPDESVTPPSISGLMTKSFDGSFAPDAHRDELVHGAGCQSRNVSSALNAGSQHVDGQKMVRFSVNSNKTSQGAHDLMACGVENLSSHMGSLALTEMDWIAGNQGEVSTVINHDESKHRNFSNTECEMNMKNNGGISMLAQRTPAMEDQLKRFGDFLAQPVSQPSFGPSYATTTSVHSSSVPMLNSTTYCSHLHQEGVGNIATEPLSGFSANIQHEAKRNVMPTSGSSLKDISGEDKNGKGNDDIHALSRAVDTEKVRRQNDISHEQRGKLTRESDIPKHALQHNDKPYEGKGFIGDAMDTKSKAQVPKKSVSDVNLDPSGSEKQEKVASGKSSSTIRKRNYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIVYLNKLKGKNNIIQLVDYEVTDRTLLQEVLNGSTNNKDARVKDDGYIYMVLEYGEIDLAHMLSQKWKEIDSDQIIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNEKDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEIKYEPIGNHWLVDLMKKCLAWDRNERWRIPQLLQHPFLVPPVSPHLSLSQHQSSKLLQLIAETCENDQEASYLCSQLQQLLINSVQPVTSLLITSKDDQSELFSQTSKNFFLQHKNLATQR 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18250911 18255958 - Carg18223-RA Car04g02260 147685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02260 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Car04g02260 849 MobiDBLite consensus disorder prediction 52 87 - -
Car04g02260 849 MobiDBLite consensus disorder prediction 1 40 - -
Car04g02260 849 MobiDBLite consensus disorder prediction 18 40 - -
Car04g02260 849 ProSitePatterns Protein kinases ATP-binding region signature. 480 502 IPR017441 GO:0005524
Car04g02260 849 ProSiteProfiles Protein kinase domain profile. 474 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02260 849 MobiDBLite consensus disorder prediction 337 455 - -
Car04g02260 849 Pfam Protein kinase domain 474 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02260 849 MobiDBLite consensus disorder prediction 352 412 - -
Car04g02260 849 MobiDBLite consensus disorder prediction 337 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02260 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - csv:101214794 1339.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02260 Car15g00648 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02260 Car-Chr4:18250911 Car04g02247 Car-Chr4:18194981 6.12E-23 dispersed
Car15g00648 Car-Chr15:3574832 Car04g02260 Car-Chr4:18250911 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88843 PF00069 Pkinase 3.10E-55 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02260 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 0.408606 0.359293 0.241124 0.0 0.0 0.0