Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02262 ATGATCAATGTCTGTACTGGAGAGCTTGAATTGAAGCCGAAGTTGAAGAAGCAAGTGCAGAAAGCCATAAGAAACTCGCCTTTTGCAATATCAAACTCTGTTTCCTCTTCCCTGCCGATTTCATACATTCTTAACATTGGCAACAGAGCTCGAAATTCTCTGCCCCATCAAAACCCACCTTCCGCCGCTTGTCCATGCTACACCACCGTCATATTCTTGTACACTACAAGAAACTTCGATAATCGTACAAAGGATAGTATAATTCCCACGTTTTTGTTACTCATGTTTACGAATTGCATAGCGAAGGAATTGCGCCACTGCGCGCAAGTTAGAGCTTTCAGGCGAGGCAATTCCCTTCATGCTTATCTGAGGAAATTTGGGTGTTTGAACGATGTGTTTATTGCGAACAATTTGATTTCAATGTACGCGGAGTTTTCGAATTTACGAGATGCAGAGAAGGTGTTTGATGAAATGTCTGACAGAAATATTGTTACTTGGACCACCCTGGTTTCTGCATTTACTGATAGTGGAAGACCTTATGAGGCACTCCGAGTGTATGATGATATGCCGAAATCTGAGACGGCCAATGGGTACATGTATTCCGCGGTTTTGAAGGCATGTGGGCTTGTGGGTGATTTGGATCGGGGTAAGTTAATTCAAGAAAGAATATATGGGGGTAAGTTGCAGGGTGATACTATTTTGATGAATTCTCTCATGGATATGTATGTGAAATGTGGAAGCTTGAGTGATGCGGTGAAGGTTTTTCACAATATTTCACGTGCGACCACAACTACTTGGAATATCATTATTTCTGGGTATAGTAAGGCCGGTTTGATGGTGGAGGCTGAAAAACTTTTTCATTGTATGCCACAGCCAAATGTTGTGTCTTGGAACAGCATGATTGCTGGCTTTGCAGACAATGGGAGTCAGCGGGCGTTGGAATTTGTGTCCTTGATGCACAGAAAGGGAATTAAGCTTGATGATTTCACATTTCCATGTGCTTTAAAGATCAGTGCGCTTCATGGGTTATTAGTCATCGGGAAACAAATTCATTCCTATGTCACCAAATTGGGGCATGGATCTAGTTGTTTTACACTGTCTGCTCTGATTGATATGTATTCAAATTGCAATGGCCTGACTGAAGCAGTCAAGTTGTTTGACCAACACTCTTCCTTCAACCCTTCCATTTCTGAGAACCTGGCACTGTGGAACTCGATGCTCTCAGGATATGTTATCAACAACTGTAACCAAGCTGCTTTGAATTTGATTTCATACATCCATTGCTCGGGTACGATATTGGACTCTTACACCTTTGGTGGTGCTTTAAAGGTTTGCATCAACTTATTAAATCCGAGGGTTGGTTTTCAAGTACATGGTCTTATTGTCACTTGTGGTTATGAATTGGATTATGTTGTTGGAAGCATTGTTGTGGATCTCTATGCAAAACTAGGACGCATCGACGATGCATTAGCACTGTTCCATAGGCTTCCAAGGAAAGATATCATAGCCTGGTCCGGTTTGATCCTGGGGTGTGCTCAAATGGGATTGAACTGGTTAGCTTTCTCAATGTTCAAAGATATGCTCGAGTTGGCTCATGAAATAGATCATTTTGTCATTTCAACCACTCTGAAAGTCTGCTCCAATTTAGCATCTCTTAGAAGTGGAAAGCAGGTCCATGCATTCTGTGTCAAAAGTGGGTATGAAATGGAGGGGTTCACAATAACATCCCTTCTTGATATGTATTCAAAATGCGGTGAAATTGAGGATGCATTAACATTGTTTGATTGTATACAAGAAAAAGACATAGTAACTTGGACTGGGATCATTGTAGGATGTGGACAAAATGGAAGGGCGGCAGAAGCTGTCAGGTTTTTTCATGAGATGATTCAATCAGGGCTAAATCCAAATGAAATCACCTTTCTAGGGGTGCTTTCTGCATGTCGATATGCTGGTTTGATCGAAGAGGCACGAAACATATTTAATTCCATGAAATCTGTATATGGACTAGAGCCTCATTTAGAGCATTATTGCTGCATGGTTGATCTTCTTGCTCTAGCTGGGCTACCTGAAGAAGCTGAAAAATTGATAGCAAATATGCCGTTTGAGCCAGATCAGACCACATGGCGCACTTTGCTAGGGGCGTGTGGAACTCGTAACGATACCAAGCTTATTAACAGTGTTGCTAATGGCCTTCTTGAAGCTACACCAGATGACCCTTCAACGTACGTGTCACTTTCAAATGCTTATGCGTCGCTGGGGATGTGGCATAACCTAAGCAAAGCGAGGGAGGCTGCCAAAAAGGTGGGAGTCAAAAGAGCTGGGTTAAGCTGGATTGAGGTTGCGAGTTGA 2349 42.36 MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARNSLPHQNPPSAACPCYTTVIFLYTTRNFDNRTKDSIIPTFLLLMFTNCIAKELRHCAQVRAFRRGNSLHAYLRKFGCLNDVFIANNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVKVFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRALEFVSLMHRKGIKLDDFTFPCALKISALHGLLVIGKQIHSYVTKLGHGSSCFTLSALIDMYSNCNGLTEAVKLFDQHSSFNPSISENLALWNSMLSGYVINNCNQAALNLISYIHCSGTILDSYTFGGALKVCINLLNPRVGFQVHGLIVTCGYELDYVVGSIVVDLYAKLGRIDDALALFHRLPRKDIIAWSGLILGCAQMGLNWLAFSMFKDMLELAHEIDHFVISTTLKVCSNLASLRSGKQVHAFCVKSGYEMEGFTITSLLDMYSKCGEIEDALTLFDCIQEKDIVTWTGIIVGCGQNGRAAEAVRFFHEMIQSGLNPNEITFLGVLSACRYAGLIEEARNIFNSMKSVYGLEPHLEHYCCMVDLLALAGLPEEAEKLIANMPFEPDQTTWRTLLGACGTRNDTKLINSVANGLLEATPDDPSTYVSLSNAYASLGMWHNLSKAREAAKKVGVKRAGLSWIEVAS 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18264623 18267066 - Carg18221-RA Car04g02262 147687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02262 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Car04g02262 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Car04g02262 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Car04g02262 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 192 IPR002885 -
Car04g02262 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 161 IPR002885 -
Car04g02262 782 Pfam PPR repeat 403 424 IPR002885 -
Car04g02262 782 Pfam PPR repeat 475 500 IPR002885 -
Car04g02262 782 Pfam PPR repeat 235 257 IPR002885 -
Car04g02262 782 Pfam PPR repeat 164 192 IPR002885 -
Car04g02262 782 Pfam PPR repeat 295 323 IPR002885 -
Car04g02262 782 Pfam PPR repeat 265 290 IPR002885 -
Car04g02262 782 Pfam PPR repeat 503 529 IPR002885 -
Car04g02262 782 Pfam PPR repeat 675 699 IPR002885 -
Car04g02262 782 Pfam PPR repeat 365 387 IPR002885 -
Car04g02262 782 Pfam PPR repeat 136 163 IPR002885 -
Car04g02262 782 Pfam E motif 723 779 IPR046848 -
Car04g02262 782 Pfam PPR repeat family 600 647 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02262 - - - bhj:120067076 1270.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02262 Car-Chr4:18264623 Car03g00097 Car-Chr3:1249552 1.29E-21 dispersed
Car11g01285 Car-Chr11:10696535 Car04g02262 Car-Chr4:18264623 7.53E-19 dispersed
Car04g02262 Car-Chr4:18264623 Car04g02268 Car-Chr4:18290621 2.09E-07 proximal
Car04g02262 Car-Chr4:18264623 Car04g02269 Car-Chr4:18292605 1.90E-63 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g313 . . . . . . . . Cmo04g02450 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00193 . Bda01g01413 Bpe02g01626 . . . . . . . . Car04g02262 . Cpe01g02030 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009162 1 3 1 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02262 Car_Chr04 FPKM 1.384243 1.525694 0.068668 0.09079 6.908917 4.98105 6.098948 0.03183 0.103648 0.020264