Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02271 ATGGGCAAAACGGCAGAAATAAGAACATCGGAGAGCTCTCGAACTTTCACCATAATAAACAACTGCAAAGAAACAATCTGGCCGGCGATCTTCCCAGGAGAGCATTTCAATGGCGGCGGTTTTGCACTAAAACGCGGTCAATCCATAGTTTTCAAGGCGCCAGTAGGCTGGTCCGGTCGGATATGGGGTCGAACCGGTTGCAACTTCGACCAGACCGGAAACGGGCAGTGCCAAACCGGCGCTTGTGGAACTTCCCTCAAATGTCAAGGCTCTGGAGAGACACCGGCATCCCTCGCCGAATTCACCCTCGCTACCCTCGATTTTTACGACGTCAGCCTCGTCGACGGCTTCAATTTGCCGATGGCGGTGACGCCAATCAACGGAACCGGAAAGTGCGGCCTGGCCGGCTGCGATAGCGATTTGAGATCCAATTGCCCGTCGGCATTGGCGGTAAAATCGAAAGGGAAAGTCATCGCCTGCCGGAGCGCCTGCGATGTGTTTAACACCGATGAGTACTGTTGCAGAGGATCTTATGGGAATCCGTCGACTTGCCGGCCGACGGTTTACTCTAAGAAATTTAAGGAGGCGTGTCCGACGGCGTATAGTTATGCGTACGATGATCCGACCAGTATTTTCACCTGCAACGCCGCCGATTACGTCGTCAGCTTTTGCTCCGGCAGGAACCACAAGGTGTGCAGTTACCACGATCACAAACTGGTCTGCAGTGGATCAAATGGCTCGAAATCGTTCATCAGAGGGCGGTGGCCTCTAATGGCAGCTGTTTTAATTGTGATCAATTTATGGGTTCTTTTTTAA 816 52.33 MGKTAEIRTSESSRTFTIINNCKETIWPAIFPGEHFNGGGFALKRGQSIVFKAPVGWSGRIWGRTGCNFDQTGNGQCQTGACGTSLKCQGSGETPASLAEFTLATLDFYDVSLVDGFNLPMAVTPINGTGKCGLAGCDSDLRSNCPSALAVKSKGKVIACRSACDVFNTDEYCCRGSYGNPSTCRPTVYSKKFKEACPTAYSYAYDDPTSIFTCNAADYVVSFCSGRNHKVCSYHDHKLVCSGSNGSKSFIRGRWPLMAAVLIVINLWVLF 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18297072 18298043 - Carg24458-RA Car04g02271 147696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02271 271 Pfam Thaumatin family 20 224 IPR001938 -
Car04g02271 271 ProSiteProfiles Thaumatin family profile. 13 224 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02271 - - - cmos:111464513 556.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02271 Car15g00645 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02271 Car-Chr4:18297072 Car16g00335 Car-Chr16:2049856 2.54E-104 dispersed
Car09g01102 Car-Chr9:11200663 Car04g02271 Car-Chr4:18297072 2.32E-11 dispersed
Car15g00645 Car-Chr15:3564862 Car04g02271 Car-Chr4:18297072 1.95E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g310 . . . . . . . . Cmo04g02452 Cmo15g00713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00186 . . Bda13g01491 Bpe02g01628 Bpe14g00373 . Bma02g00227 . . . . . Car04g02271 Car15g00645 Cpe01g02032 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02271 Car_Chr04 FPKM 11.128507 11.289714 10.544035 11.236668 10.513835 13.03941 11.65029 18.897665 19.266821 18.251446