Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02274 ATGGAGCTCGAGAAGGTCCAGGACATCGCTTCCGCCGTGCTCTCCTCCGGCACTCTCCCCGCCCAGTTCATCCGCCAGGAGACCGAGCAGCCTGGCATTACCACAGTCAAGGGCCAAACCCTCGCCGTTCCCGTCGTCGATTTCAGCAACCCAGATCAACACTCTGTTATTCAAGCCATCGATGATGCCTCTCGCCATTGGGGCATGTTTCAAATCATCAACCACGATATCCCCAATGAAGCAATCGCCCATTTGCAGGCCGTTGGGAAGGAATTCTTTGAGCTCCCAAAAGAGGAGAAAGAGGTGTACGCTAAGTCCCCTGGTTCCAAATCCGTCGAAGGCTATGGAACTAAGCTCCAGAAGGAAGTCGGTGGAAAGAAGGATTGGGTCGACCATTTGTTCCATATCATTTGGCCGCCGTCCGCCATTAACTTCAAATTCTGGCCTCAAAAACCCCCTTCTTACAGGGCTGCAAACGAGGAGTACAGAAAGCATTTACATGGGGTTGTGGATAAGCTGTTTAGAAGCCTGTCACTGGGGCTGGGGCTTGAAGAACATGAACTGAAACAGAGTGCCGGTGGAGATGATTTAGTGTACTTAATGAAAATCAACTACTACCCACCATGTCCACGCCCTGATCTAGCTCTTGGAGTTGCTCCTCACACCGACATGTCGGTCATCACAATTCTTGTGCCCAATGATGTCCAAGGCCTCCAGGCGTTCAAAGATGGCCATTGGTACGATGTCAATTACATCCCCAACGCCCTCGTCATCCACATCGGCGATCAAATTGAGATTCTGAGTAATGGGAAGTACAAGAGCGTGCTGCATAGGACGACGGTGAACAAGGAGAAGGCGAGGATATCGTGGCCGGTGTTCTTGGAGCCACCGGCGGAGTTCGAAGTTGGGCCTCATCCGAAACTGGTCGATGAAGACAATCCGCCGAAGTTCAAGACGAAGAAGTACGGTGAGTATGCGTATTGCAAGCTTAATAAAATTCCCCAGTGA 1008 51.29 MELEKVQDIASAVLSSGTLPAQFIRQETEQPGITTVKGQTLAVPVVDFSNPDQHSVIQAIDDASRHWGMFQIINHDIPNEAIAHLQAVGKEFFELPKEEKEVYAKSPGSKSVEGYGTKLQKEVGGKKDWVDHLFHIIWPPSAINFKFWPQKPPSYRAANEEYRKHLHGVVDKLFRSLSLGLGLEEHELKQSAGGDDLVYLMKINYYPPCPRPDLALGVAPHTDMSVITILVPNDVQGLQAFKDGHWYDVNYIPNALVIHIGDQIEILSNGKYKSVLHRTTVNKEKARISWPVFLEPPAEFEVGPHPKLVDEDNPPKFKTKKYGEYAYCKLNKIPQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18316356 18318316 - Carg24455-RA Car04g02274 147699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02274 335 Pfam 2OG-Fe(II) oxygenase superfamily 201 296 IPR044861 -
Car04g02274 335 Pfam non-haem dioxygenase in morphine synthesis N-terminal 43 140 IPR026992 -
Car04g02274 335 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 296 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02274 K05278 FLS; flavonol synthase [EC:1.14.20.6] - csv:101219245 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02274 Car-Chr4:18316356 Car06g01279 Car-Chr6:9189324 3.10E-68 dispersed
Car16g00210 Car-Chr16:1192383 Car04g02274 Car-Chr4:18316356 8.14E-41 transposed
Car15g00641 Car-Chr15:3546306 Car04g02274 Car-Chr4:18316356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g305 . . . . . Bpe04g00480 . . Cmo04g02456 . . . . . . . . . . . . . . . Cla08g00561 Cam08g0978 Cec08g0568 Cco08g0677 Clacu08g0685 . Cre08g0500 . . . . . . . . . Blo18g00190 . Bda01g01416 . . Bma01g00830 . . . . . . Car04g02274 . Cpe01g02036 . . . . . . . . . . . . . . . Lsi08g00410 . Chy03g00353 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003902 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02274 Car_Chr04 FPKM 29.722839 35.388489 33.515892 31.166773 8.982403 6.464617 8.157798 46.093864 48.089809 57.070335