Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02288 ATGGAGAGAAGAAAATGGCCATGGAAGAGAAAGTCATCTGATAAGAGCCCTGGAGAAACTGAGAGTTCTGGTTCAATGTCGTCCTACTCCGAGAGGTTTTCCGACGAGCAGGACGCAGTCAAATCATCTCCGACTCACGAGACTCTATCGCCTGAAGTAACATCGAAAGCAGTATGTAAGGAGGACATTGATGACGACGATGATGCCGATTCGCCAAAACAAGAAGATATCAATGATAGTGTGAAAGATCTCACTGATAGATTATCTGCTGCTCTTTTGAATGTGAGGGAAAAAGAAGACTTGGTAAAGCAGCATGCCAAAGTTGCTGAAGAAGCCATTGCAGGATGGGAAAAGGCGGAAAGCGAAGTTGGACTTCTTAAACAGCAGCTCAGGACCACGGTTCAGCAAAAGTCGGCATTGGAAGATCGAGTGAGCCACCTTGATGGGGCACTCAAAGAATGTGTTAGGCAGCTCAGACAGGGAAGGGAGGAGCAAGAGCAGAAGATTCGTGACGCCGTGGAGGAAAAAAGCCGTGATTGGGAATCGACCAAGGCGGATCTCGAGAGGCAGCTCCTTGAGCTCCAGAGCAAAGCAGACACTGCTCAATCTGAATCTCCTAAAGTTGATCCTAGCCTTGGCAAGATACTGGAGTCATTGAAGAGAGAAAATGCAGCCCTTAGGCATGAGCTCCATGCTCAATATAGGGAGCTAGAAACCAGGACTATAGAGAGAGATTTGAGTACACAAACAGCTGAAACAGCCAGTAAGCAGCATCTTGACAGCATAAAGAAAATGGCCAAGCTTGAGGCCGAGTGTCGGAGGTTAAAAGTAATTTCATCCCGACCATCATTGATTAATGATCACAAATCCATGGCTGCTTCGACAATGTCTATCGAGTCACTTACCGACACTCAATCAGATAATGGAGAGCAGCTTAATGCAGTCGATATCGATGTAAGACGAACTGAACGAAACAAATGTGAACCTAGTTGCTCAGACTCATGGGCATCAGCCTTACCTAGTAATCTTCCATCTTCTCTTGAACTTGATCTCATGGATGATTTTCTTGAGATGGAAAGGCTTGCTGCATTACCCGAAACTGATAAAGGAAACCATCACCAAGAATCAGAACCTTCCGCTCGCCCAGCTGCTGAAGAAAGTGCCATGATAACCGAGCTCGAGACGATGTGGCACGAGAGATCTTTAATGAAAGAGAAGCTGAATGAGATGGAAGAAGCAAAGATAGAATTGGAAGAGAAGCTGAAACAAATGGAAATGGAGAAGAACGAAATGGAAGAGCGGCTTGAGATGATGGAAATCGAGAGAGATGAAGTGAATCAAATGTTAGCGAAAATGGAAACCGAGCGATCCGAATTGGGGCAGATCTTACTGAAAATGGAACAAGAGAAGGTCGAAATGGGAGATAAGTTAATGAAGTTAGAGACAGAAAAAGATGAACTGGAGACTGCTTTATCCGAGAGTCAAAACTCTGTTGAACTTTCACAATCTCAACTCAAGGAAACAGAAATGAAAGTGGAAAAGTTACAAACTGAGCTCACCATTGCAAATGAATCAAAGCTAAGAATTGAGTATCAACTTATCAGCATGGAAGCAGAATCCTTGACCATGTCTGCAAAAGTTGGCATGTTAGAATCTGATATCCAAAAAGAGAGGGCTTCGGCATTGGCATTGACAGTCAAGTCTGTAGCTGCTGGGAAGCTTGCTGACTGTCAAAAGACAATAGCTTCTCTTGGGGATCAGCTCAAATCTCTAGCAGCGCTCGAAGATTTTCTGATCGACACGACGCAGCTACCGGAGTTCACAGCCAGTGAATCGCATAACGTCATTAGAGATGGTGAGGAGCAATGGCAGCACTCGAATGGGGCGTTTTCGCCCAAAAGAGATTCAAACTATAGTAAAGTAGTTGATGACAGTTCTGAACCATCAATGAGTAAGAATGAAGACAATTCGCCCCCGTCTTCGTCGTCGTCGACTTCATCGTCTGTGATTGCAAGTCATGTTGTCAATTCTGAGAAAAACCGAAACGGTTTTGCGAAGTTTTTCTCTCGAACCAAGAGCGGGATAAAGCTAGAAATTTAG 2100 44.57 MERRKWPWKRKSSDKSPGETESSGSMSSYSERFSDEQDAVKSSPTHETLSPEVTSKAVCKEDIDDDDDADSPKQEDINDSVKDLTDRLSAALLNVREKEDLVKQHAKVAEEAIAGWEKAESEVGLLKQQLRTTVQQKSALEDRVSHLDGALKECVRQLRQGREEQEQKIRDAVEEKSRDWESTKADLERQLLELQSKADTAQSESPKVDPSLGKILESLKRENAALRHELHAQYRELETRTIERDLSTQTAETASKQHLDSIKKMAKLEAECRRLKVISSRPSLINDHKSMAASTMSIESLTDTQSDNGEQLNAVDIDVRRTERNKCEPSCSDSWASALPSNLPSSLELDLMDDFLEMERLAALPETDKGNHHQESEPSARPAAEESAMITELETMWHERSLMKEKLNEMEEAKIELEEKLKQMEMEKNEMEERLEMMEIERDEVNQMLAKMETERSELGQILLKMEQEKVEMGDKLMKLETEKDELETALSESQNSVELSQSQLKETEMKVEKLQTELTIANESKLRIEYQLISMEAESLTMSAKVGMLESDIQKERASALALTVKSVAAGKLADCQKTIASLGDQLKSLAALEDFLIDTTQLPEFTASESHNVIRDGEEQWQHSNGAFSPKRDSNYSKVVDDSSEPSMSKNEDNSPPSSSSSTSSSVIASHVVNSEKNRNGFAKFFSRTKSGIKLEI 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18396983 18400731 + Carg24440-RA Car04g02288 147713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02288 699 MobiDBLite consensus disorder prediction 18 33 - -
Car04g02288 699 Coils Coil 81 101 - -
Car04g02288 699 Coils Coil 400 525 - -
Car04g02288 699 MobiDBLite consensus disorder prediction 366 385 - -
Car04g02288 699 MobiDBLite consensus disorder prediction 366 380 - -
Car04g02288 699 MobiDBLite consensus disorder prediction 1 83 - -
Car04g02288 699 Pfam Filament-like plant protein, long coiled-coil 98 208 IPR008587 -
Car04g02288 699 Pfam Filament-like plant protein, long coiled-coil 214 278 IPR008587 -
Car04g02288 699 Coils Coil 216 236 - -
Car04g02288 699 MobiDBLite consensus disorder prediction 159 183 - -
Car04g02288 699 Coils Coil 155 204 - -
Car04g02288 699 MobiDBLite consensus disorder prediction 642 675 - -
Car04g02288 699 MobiDBLite consensus disorder prediction 625 675 - -
Car04g02288 699 MobiDBLite consensus disorder prediction 1 17 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02288 - - - csv:101206243 975.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02288 Car09g00102 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02288 Car-Chr4:18396983 Car09g00102 Car-Chr9:498541 1.78E-48 dispersed
Car15g00625 Car-Chr15:3469372 Car04g02288 Car-Chr4:18396983 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g262 . Blo12g00890 . Bda03g00283 . . Bma04g00240 . Cmo04g02471 . . . . . . Cpe06g00076 . . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 . Cone7ag1530 Cone17ag1283 Cone20ag0443 Lsi04g01729 . . . . Blo18g00184 . . . . . . . . . . . Car04g02288 Car09g00102 Cpe01g02050 . . . . . . . . . . . . . . . Lsi08g00434 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02288 Car_Chr04 FPKM 7.450828 8.470218 2.039734 3.045239 1.165036 0.769789 1.326818 0.0 0.412478 0.558744