Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02296 ATGGAATTGAAAGCAGCAGATGTAGCGGAAGTTCAACAAATACAGCAACATTTCCATGTGTTGGCTGTCGATGATAACCTTATAGACAGAAAACTTTTGGAAAAGCTCCTAAGAATTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGACAAAGCTCTTAGATACCTGGGTCTGCTTGATGACCTTGACAAATTTTCTTCCTCTGCTGCTTCATTTTCTTCCCCACAACTCTCCCACCAACAGGAAGTCAAAGTCAACTTAATCATGACAGACTACTGTATGCCTGGGATGACTGGTTATGATCTACTCAAACGACTCAAGGGATCTTCTTGGAAAGATATTCCTGTTGTTGTCATGTCATCGGAGAATGAACCTTCAAGAATCCACATGTGCTTGGAAGAAGGAGCAGAGGAATTCCTTTTGAAGCCTCTTCAACTATCAGACGTGAAGAAGCTCGAGCCTCACCTTCAGAGGTCCCTCAGCCGTTCATCTAATGAAATAAAAGAAGAAGAAACCGTCGAAATCGGAATCACTAATTCCGACGCCATTGACGACGAAAACAGCACGAAAGAAGAAAATAACAAAAACGACAATAACAATACCTTCAGCAAGAGAAAAGCCGCGAATCCAGAGCCATCTGAAAGACGACCAAAACTGAAAGAACTGCAAGCTGCAGTATAA 684 42.69 MELKAADVAEVQQIQQHFHVLAVDDNLIDRKLLEKLLRISSCEVTCVESGDKALRYLGLLDDLDKFSSSAASFSSPQLSHQQEVKVNLIMTDYCMPGMTGYDLLKRLKGSSWKDIPVVVMSSENEPSRIHMCLEEGAEEFLLKPLQLSDVKKLEPHLQRSLSRSSNEIKEEETVEIGITNSDAIDDENSTKEENNKNDNNNTFSKRKAANPEPSERRPKLKELQAAV 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18440015 18442403 + Carg24432-RA Car04g02296 147721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02296 227 MobiDBLite consensus disorder prediction 185 200 - -
Car04g02296 227 Pfam Response regulator receiver domain 20 151 IPR001789 GO:0000160
Car04g02296 227 MobiDBLite consensus disorder prediction 153 176 - -
Car04g02296 227 ProSiteProfiles Response regulatory domain profile. 19 158 IPR001789 GO:0000160
Car04g02296 227 MobiDBLite consensus disorder prediction 209 227 - -
Car04g02296 227 MobiDBLite consensus disorder prediction 153 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02296 K14492 ARR-A; two-component response regulator ARR-A family - csv:101216267 282.722
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02296 Car15g00618 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02296 Car-Chr4:18440015 Car14g00475 Car-Chr14:2529750 5.45E-58 dispersed
Car15g00618 Car-Chr15:3430886 Car04g02296 Car-Chr4:18440015 7.99E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g251 Blo01g01297 . . . Bpe02g00640 . . Bma01g02073 Cmo04g02481 Cmo15g00681 . . . . Sed01g3118 . . Bhi04g01902 Tan11g1266 Cmetu03g2252 . . . Lcy10g1232 Cla08g00600 Cam08g1013 Cec08g0604 Cco08g0714 Clacu08g0726 . Cre08g0534 . . Cone17ag1286 Cone20ag0441 . Csa04g01951 . Cme03g00540 . . . . . . . . . . . . . Car04g02296 Car15g00618 Cpe01g02057 . . . . . . . . . . . . . . . Lsi08g00441 . Chy03g00788 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car09g00371 . 52 347 Response Regulator Gene Family AT3G16857 50.8 3.6e-59 226.9
Car05g00053 . 54 258 Response Regulator Gene Family AT3G16857 51.8 3.3e-52 203.8
Car12g00045 . 52 256 Response Regulator Gene Family AT3G16857 51.3 5.6e-52 203.0
Car09g00371 . 1 374 Response Regulator Gene Family AT4G31920 53.8 2.8e-87 320.1
Car02g00843 . 18 377 Response Regulator Gene Family AT4G31920 50.3 1.9e-75 280.8
Car08g01126 CCT,CST,ECH 25 289 Response Regulator Gene Family AT4G31920 54.0 4.3e-72 269.6
Car14g01419 CCT,CST,ECH 16 272 Response Regulator Gene Family AT4G31920 53.8 4.5e-69 259.6
Car05g00053 . 13 261 Response Regulator Gene Family AT4G31920 52.0 7.4e-64 242.3
Car12g00045 . 11 259 Response Regulator Gene Family AT4G31920 50.4 2.6e-61 233.8
Car06g01314 CCT,CST,ECH 19 227 Response Regulator Gene Family AT4G31920 51.0 5.1e-49 193.0
Car09g00371 . 93 256 Response Regulator Gene Family AT1G67710 50.6 1.3e-37 154.8
Car09g00371 . 1 374 Response Regulator Gene Family AT2G25180 62.5 8.7e-103 371.7
Car02g00843 . 16 381 Response Regulator Gene Family AT2G25180 50.4 2.5e-86 317.0
Car14g01419 CCT,CST,ECH 18 292 Response Regulator Gene Family AT2G25180 54.6 1.4e-76 284.6
Car08g01126 CCT,CST,ECH 27 289 Response Regulator Gene Family AT2G25180 57.1 6.9e-76 282.3
Car12g00045 . 6 256 Response Regulator Gene Family AT2G25180 54.5 1.3e-69 261.5
Car05g00053 . 13 258 Response Regulator Gene Family AT2G25180 54.8 2.6e-67 253.8
Car05g00053 . 74 261 Response Regulator Gene Family AT2G01760 51.0 2.8e-47 186.4
Car05g00053 . 11 260 Response Regulator Gene Family AT5G58080 51.0 4.6e-62 236.5
Car12g00045 . 9 258 Response Regulator Gene Family AT5G58080 50.2 5.1e-61 233.0
Car08g01126 CCT,CST,ECH 26 251 Response Regulator Gene Family AT4G16110 66.7 4.4e-79 293.1
Car14g01419 CCT,CST,ECH 18 243 Response Regulator Gene Family AT4G16110 66.1 1.8e-77 287.7
Car06g01314 CCT,CST,ECH 20 223 Response Regulator Gene Family AT4G16110 63.8 2.7e-65 247.3
Car09g00371 . 11 234 Response Regulator Gene Family AT4G16110 66.4 4.1e-61 233.4
Car12g00045 . 10 235 Response Regulator Gene Family AT4G16110 54.5 8.6e-59 225.7
Car05g00053 . 12 237 Response Regulator Gene Family AT4G16110 54.0 2.5e-58 224.2
Car02g00843 . 17 240 Response Regulator Gene Family AT4G16110 52.4 1.5e-50 198.4
Car10g00447 . 10 231 Response Regulator Gene Family AT4G16110 58.0 2.6e-47 187.6
Car12g01145 . 130 390 Response Regulator Gene Family AT4G16110 51.7 1.7e-46 184.9
Car17g00322 CCT,CST,ECH 39 154 Response Regulator Gene Family AT4G16110 61.7 2.8e-41 167.5
Car10g00145 . 7 172 Response Regulator Gene Family AT3G48100 65.3 5.1e-54 208.0
Car04g01645 . 29 162 Response Regulator Gene Family AT3G48100 72.4 1.2e-50 196.8
Car03g00131 CCT,CST 10 156 Response Regulator Gene Family AT3G48100 57.1 1.9e-40 162.9
Car04g02124 . 11 151 Response Regulator Gene Family AT3G48100 59.6 3.2e-40 162.2
Car15g00784 . 11 152 Response Regulator Gene Family AT3G48100 58.5 9.4e-40 160.6
Car14g00475 CCT 3 155 Response Regulator Gene Family AT3G48100 52.9 2.1e-39 159.5
Car04g02296 CST 19 175 Response Regulator Gene Family AT3G48100 52.5 5.2e-38 154.8
Car04g01645 . 1 175 Response Regulator Gene Family AT1G59940 65.9 1.3e-57 220.7
Car10g00145 . 7 168 Response Regulator Gene Family AT1G59940 60.4 2.2e-47 186.8
Car04g02124 . 5 152 Response Regulator Gene Family AT1G59940 58.8 2.5e-40 163.3
Car14g00475 CCT 8 153 Response Regulator Gene Family AT1G59940 56.8 5.7e-40 162.2
Car15g00784 . 5 153 Response Regulator Gene Family AT1G59940 56.4 2.4e-38 156.8
Car03g00131 CCT,CST 11 154 Response Regulator Gene Family AT1G59940 55.6 4.1e-38 156.0
Car04g02296 CST 19 161 Response Regulator Gene Family AT1G59940 56.9 6.9e-38 155.2
Car04g00094 CCT 14 147 Response Regulator Gene Family AT1G59940 60.4 2.0e-37 153.7
Car04g01645 . 16 199 Response Regulator Gene Family AT1G10470 64.7 5.6e-56 214.9
Car10g00145 . 21 187 Response Regulator Gene Family AT1G10470 62.3 1.1e-46 184.1
Car14g00475 CCT 10 153 Response Regulator Gene Family AT1G10470 57.6 1.6e-39 160.2
Car04g02124 . 11 157 Response Regulator Gene Family AT1G10470 57.1 2.8e-39 159.5
Car03g00131 CCT,CST 17 154 Response Regulator Gene Family AT1G10470 60.1 2.4e-38 156.4
Car15g00784 . 11 153 Response Regulator Gene Family AT1G10470 58.7 9.0e-38 154.5
Car04g00094 CCT 16 147 Response Regulator Gene Family AT1G10470 59.8 9.9e-37 151.0
Car04g02296 CST 19 165 Response Regulator Gene Family AT1G10470 53.4 1.7e-36 150.2
Car10g00145 . 7 172 Response Regulator Gene Family AT3G48100 65.3 5.1e-54 208.0
Car04g01645 . 29 162 Response Regulator Gene Family AT3G48100 72.4 1.2e-50 196.8
Car03g00131 CCT,CST 10 156 Response Regulator Gene Family AT3G48100 57.1 1.9e-40 162.9
Car04g02124 . 11 151 Response Regulator Gene Family AT3G48100 59.6 3.2e-40 162.2
Car15g00784 . 11 152 Response Regulator Gene Family AT3G48100 58.5 9.4e-40 160.6
Car14g00475 CCT 3 155 Response Regulator Gene Family AT3G48100 52.9 2.1e-39 159.5
Car04g02296 CST 19 175 Response Regulator Gene Family AT3G48100 52.5 5.2e-38 154.8
Car10g00145 . 24 172 Response Regulator Gene Family AT5G62920 67.8 6.0e-50 194.5
Car04g01645 . 25 168 Response Regulator Gene Family AT5G62920 68.8 6.6e-49 191.0
Car04g02124 . 11 151 Response Regulator Gene Family AT5G62920 60.3 4.3e-40 161.8
Car03g00131 CCT,CST 12 156 Response Regulator Gene Family AT5G62920 57.2 1.6e-39 159.8
Car14g00475 CCT 10 155 Response Regulator Gene Family AT5G62920 55.5 3.6e-39 158.7
Car15g00784 . 11 152 Response Regulator Gene Family AT5G62920 59.2 8.1e-39 157.5
Car10g00145 . 23 171 Response Regulator Gene Family AT1G19050 68.9 7.8e-51 197.6
Car04g01645 . 15 185 Response Regulator Gene Family AT1G19050 57.0 2.2e-45 179.5
Car04g02124 . 3 154 Response Regulator Gene Family AT1G19050 52.6 6.8e-39 157.9
Car03g00131 CCT,CST 11 156 Response Regulator Gene Family AT1G19050 55.5 1.2e-38 157.1
Car14g00475 CCT 8 155 Response Regulator Gene Family AT1G19050 54.1 2.0e-38 156.4
Car15g00784 . 3 155 Response Regulator Gene Family AT1G19050 51.0 1.7e-37 153.3
Car03g00131 CCT,CST 8 265 Response Regulator Gene Family AT2G41310 53.1 2.0e-60 229.6
Car14g00475 CCT 1 157 Response Regulator Gene Family AT2G41310 72.6 1.0e-56 217.2
Car15g00784 . 8 154 Response Regulator Gene Family AT2G41310 66.7 1.2e-49 193.7
Car04g02124 . 8 153 Response Regulator Gene Family AT2G41310 67.1 1.6e-49 193.4
Car07g01312 CCT,CST 51 254 Response Regulator Gene Family AT2G41310 53.4 2.0e-47 186.4
Car04g02296 CST 11 160 Response Regulator Gene Family AT2G41310 59.2 1.0e-43 174.1
Car04g01645 . 25 158 Response Regulator Gene Family AT2G41310 59.6 2.7e-41 166.0
Car10g00145 . 22 152 Response Regulator Gene Family AT2G41310 59.7 3.3e-39 159.1
Car15g00618 CST 24 165 Response Regulator Gene Family AT2G41310 59.7 3.3e-39 159.1
Car04g00094 CCT 16 148 Response Regulator Gene Family AT2G41310 54.4 9.1e-37 151.0
Car03g00131 CCT,CST 8 265 Response Regulator Gene Family AT3G57040 52.9 1.2e-63 240.4
Car14g00475 CCT 1 159 Response Regulator Gene Family AT3G57040 76.1 4.7e-60 228.4
Car04g02124 . 1 153 Response Regulator Gene Family AT3G57040 68.0 8.0e-52 201.1
Car15g00784 . 1 154 Response Regulator Gene Family AT3G57040 66.9 2.0e-50 196.4
Car07g01312 CCT,CST 51 262 Response Regulator Gene Family AT3G57040 54.7 3.7e-49 192.2
Car04g02296 CST 15 183 Response Regulator Gene Family AT3G57040 55.8 4.2e-45 178.7
Car04g01645 . 25 158 Response Regulator Gene Family AT3G57040 59.4 1.5e-42 170.2
Car15g00618 CST 24 165 Response Regulator Gene Family AT3G57040 60.4 7.0e-40 161.4
Car10g00145 . 22 152 Response Regulator Gene Family AT3G57040 59.6 2.0e-39 159.8
Car04g00094 CCT 14 148 Response Regulator Gene Family AT3G57040 55.0 7.3e-37 151.4
Car10g00145 . 16 171 Response Regulator Gene Family AT1G74890 69.2 1.2e-51 200.3
Car04g01645 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.3e-47 186.0
Car04g02124 . 11 146 Response Regulator Gene Family AT1G74890 59.6 6.8e-39 157.9
Car14g00475 CCT 8 153 Response Regulator Gene Family AT1G74890 55.5 6.8e-39 157.9
Car03g00131 CCT,CST 12 149 Response Regulator Gene Family AT1G74890 58.7 8.9e-39 157.5
Car15g00784 . 7 147 Response Regulator Gene Family AT1G74890 56.7 8.9e-39 157.5
Car04g00094 CCT 16 148 Response Regulator Gene Family AT2G40670 66.4 1.3e-43 173.3
Car04g01645 . 26 159 Response Regulator Gene Family AT2G40670 55.5 3.2e-39 158.7
Car14g00475 CCT 6 155 Response Regulator Gene Family AT2G40670 55.0 4.2e-39 158.3
Car04g00094 CCT 16 148 Response Regulator Gene Family AT3G56380 67.2 2.4e-44 175.6
Car04g01645 . 26 159 Response Regulator Gene Family AT3G56380 54.8 3.5e-40 161.8
Car14g00475 CCT 6 155 Response Regulator Gene Family AT3G56380 53.0 6.7e-39 157.5
Car10g00145 . 10 152 Response Regulator Gene Family AT3G56380 56.6 2.5e-38 155.6
Car04g02296 CST 11 157 Response Regulator Gene Family AT3G56380 53.0 2.1e-37 152.5
Car09g00371 . 52 347 Response Regulator Gene Family AT3G16857 50.8 3.6e-59 226.9
Car05g00053 . 54 258 Response Regulator Gene Family AT3G16857 51.8 3.3e-52 203.8
Car12g00045 . 52 256 Response Regulator Gene Family AT3G16857 51.3 5.6e-52 203.0
Car08g01126 CCT,CST,ECH 26 251 Response Regulator Gene Family AT4G16110 66.7 4.4e-79 293.1
Car14g01419 CCT,CST,ECH 18 243 Response Regulator Gene Family AT4G16110 66.1 1.8e-77 287.7
Car06g01314 CCT,CST,ECH 20 223 Response Regulator Gene Family AT4G16110 63.8 2.7e-65 247.3
Car09g00371 . 11 234 Response Regulator Gene Family AT4G16110 66.4 4.1e-61 233.4
Car12g00045 . 10 235 Response Regulator Gene Family AT4G16110 54.5 8.6e-59 225.7
Car05g00053 . 12 237 Response Regulator Gene Family AT4G16110 54.0 2.5e-58 224.2
Car02g00843 . 17 240 Response Regulator Gene Family AT4G16110 52.4 1.5e-50 198.4
Car10g00447 . 10 231 Response Regulator Gene Family AT4G16110 58.0 2.6e-47 187.6
Car12g01145 . 130 390 Response Regulator Gene Family AT4G16110 51.7 1.7e-46 184.9
Car17g00322 CCT,CST,ECH 39 154 Response Regulator Gene Family AT4G16110 61.7 2.8e-41 167.5
Car09g00371 . 1 374 Response Regulator Gene Family AT4G31920 53.8 2.8e-87 320.1
Car02g00843 . 18 377 Response Regulator Gene Family AT4G31920 50.3 1.9e-75 280.8
Car08g01126 CCT,CST,ECH 25 289 Response Regulator Gene Family AT4G31920 54.0 4.3e-72 269.6
Car14g01419 CCT,CST,ECH 16 272 Response Regulator Gene Family AT4G31920 53.8 4.5e-69 259.6
Car05g00053 . 13 261 Response Regulator Gene Family AT4G31920 52.0 7.4e-64 242.3
Car12g00045 . 11 259 Response Regulator Gene Family AT4G31920 50.4 2.6e-61 233.8
Car06g01314 CCT,CST,ECH 19 227 Response Regulator Gene Family AT4G31920 51.0 5.1e-49 193.0
Car09g00371 . 93 256 Response Regulator Gene Family AT1G67710 50.6 1.3e-37 154.8
Car09g00371 . 1 374 Response Regulator Gene Family AT2G25180 62.5 8.7e-103 371.7
Car02g00843 . 16 381 Response Regulator Gene Family AT2G25180 50.4 2.5e-86 317.0
Car14g01419 CCT,CST,ECH 18 292 Response Regulator Gene Family AT2G25180 54.6 1.4e-76 284.6
Car08g01126 CCT,CST,ECH 27 289 Response Regulator Gene Family AT2G25180 57.1 6.9e-76 282.3
Car12g00045 . 6 256 Response Regulator Gene Family AT2G25180 54.5 1.3e-69 261.5
Car05g00053 . 13 258 Response Regulator Gene Family AT2G25180 54.8 2.6e-67 253.8
Car05g00053 . 74 261 Response Regulator Gene Family AT2G01760 51.0 2.8e-47 186.4
Car05g00053 . 11 260 Response Regulator Gene Family AT5G58080 51.0 4.6e-62 236.5
Car12g00045 . 9 258 Response Regulator Gene Family AT5G58080 50.2 5.1e-61 233.0
Car13g00976 . 6 552 Response Regulator Gene Family AT5G61380 50.4 3.7e-141 499.2
Car01g00740 . 6 563 Response Regulator Gene Family AT5G61380 50.4 6.4e-141 498.4
Car07g00926 . 68 244 Response Regulator Gene Family AT5G60100 70.8 2.5e-61 233.4
Car09g01048 . 35 170 Response Regulator Gene Family AT5G60100 58.8 1.0e-41 168.3
Car12g00620 . 61 195 Response Regulator Gene Family AT5G60100 60.0 1.4e-40 164.5
Car07g00926 . 97 240 Response Regulator Gene Family AT5G24470 56.3 1.4e-41 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3445 PF00072 Response_reg 5.50E-18 CL0304 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02296 Car_Chr04 FPKM 3.749312 4.140977 3.449794 3.876047 5.691862 4.926875 7.343742 3.97923 4.440631 4.78125