Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02298 ATGGCTGCTACTGCTCTTGGAAGCGTCGCCGCCTCCTCCGCCTCGTCAACCACTCGTTTCCTCTCCTCAGCGACCAGAGCTACATTGCCGTTCTCTTCACGTTCATCGTCTTTGTCCTCTTTCAAGTTTCTCAGATCGGCTCCTCTCATTTCTCACCTTTTTCTGAATCAGGGAAGGCCGAGTTCTTGTGTATCGAGTAGAAGATTCAATGCGGCGTCTCATCCGAAATGCTTAGCGTCGGACCCTGAGCAGCTGAAGAGTGCCAGAGAAGATATCAAGGAGCTCCTGAAGACTACATTCTGCCATCCTATTTTGGTACGCCTGGGTTGGCATGATGCTGGAACTTACAATAAAAATATTGAGGAATGGCCGCAGAGAGGTGGAGCTAATGGAAGTTTAAGATTTGATGTTGAGCTGGGACATGGTGCTAATGCTGGTCTTGTTAATGCCTTGAAACTCATTGAGCCTATCAAAAAGAAGTATTCTAACGTGACATATGCTGACCTATTTCAGTTGGCTAGTGCTACAGCTATCGAGGAAGCTGGGGGACCCAAAATCCCCATGAAGTATGGAAGGGTGGATGTTGTGGGGCCAGAGCAATGCCCTGAAGAGGGGAGGCTTCCTGATGCTGGTCCTCCATCACCTGCTGCACACCTACGAGAAGTTTTCTACCGAATGGGGTTGAATGATAGGGAAATTGTTGCATTATCGGGGGCACACACATTGGGGAGATCTAGGCCAGAGCGCAGTGGTTGGGGCAAGCCAGAGACCAAATATACGAAAAATGGACCTGGTGCACCTGGTGGACAATCCTGGACTGTACAATGGCTGAAGTTCGACAACTCATATTTTAAGGATATCAAAGAAAGGAGAGATGAAGAATTACTGGTGTTGCCAACCGATGCTGCTCTCTTTGAAGATCCATCATTCAAGGTATATGCTGAGAAATATGTTGAAGATCAAGAAGCCTTCTTCAAAGACTATGCTGAAGCCCACGCCAAGCTCAGCAACCTTGGTGCTAAGTTTGACCCTCCAGAGGGTATTGTGATTGATGATGCATCATCAAAACCTGCAGGAGAGAAGTTTGATGCCGCCAAATACTCATACGGGAAGAGAGAGCTATCAGATTCAATGAAGCAGAAGATTCGGGCAGAATACGAAAGCTTTGGTGGAAGTCCAGATAAGCCTTTACCAACAAACTACTTCCTAAATATCATACTTGTGATTGCTGTTTTGGCAATTTTGACATCTCTTCTAGGAAACTGA 1266 46.68 MAATALGSVAASSASSTTRFLSSATRATLPFSSRSSSLSSFKFLRSAPLISHLFLNQGRPSSCVSSRRFNAASHPKCLASDPEQLKSAREDIKELLKTTFCHPILVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELGHGANAGLVNALKLIEPIKKKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVVGPEQCPEEGRLPDAGPPSPAAHLREVFYRMGLNDREIVALSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEELLVLPTDAALFEDPSFKVYAEKYVEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVIDDASSKPAGEKFDAAKYSYGKRELSDSMKQKIRAEYESFGGSPDKPLPTNYFLNIILVIAVLAILTSLLGN 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18450288 18456854 - Carg24430-RA Car04g02298 147723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02298 421 PRINTS Plant ascorbate peroxidase signature 102 117 IPR002207 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 PRINTS Plant ascorbate peroxidase signature 163 181 IPR002207 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 PRINTS Plant ascorbate peroxidase signature 182 194 IPR002207 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 PRINTS Plant ascorbate peroxidase signature 301 325 IPR002207 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 CDD ascorbate_peroxidase 79 343 - -
Car04g02298 421 MobiDBLite consensus disorder prediction 243 267 - -
Car04g02298 421 ProSitePatterns Peroxidases proximal heme-ligand signature. 232 242 IPR019793 -
Car04g02298 421 ProSiteProfiles Plant heme peroxidase family profile. 105 360 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 Pfam Peroxidase 89 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 Gene3D Peroxidase, domain 2 210 333 - -
Car04g02298 421 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 8 421 IPR044831 GO:0004601|GO:0034599
Car04g02298 421 Gene3D - 88 341 - -
Car04g02298 421 PRINTS Haem peroxidase superfamily signature 102 116 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 PRINTS Haem peroxidase superfamily signature 164 181 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 PRINTS Haem peroxidase superfamily signature 182 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 PRINTS Haem peroxidase superfamily signature 272 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car04g02298 421 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 8 421 - -
Car04g02298 421 SUPERFAMILY Heme-dependent peroxidases 82 341 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02298 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216755 741.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02298 Car15g00616 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02298 Car-Chr4:18450288 Car16g00613 Car-Chr16:3920485 9.37E-78 dispersed
Car15g00616 Car-Chr15:3419085 Car04g02298 Car-Chr4:18450288 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02298 Car_Chr04 FPKM 8.238893 9.036339 13.071136 14.992926 4.417455 4.37488 4.076797 12.65542 13.421574 14.030905