Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02301 ATGTTGGAAGTAATTACTGTCATTGATATCGACGACGACGATGACAACAACGAAGCTGAAAAGCGAGTCAAGGGCAACAATGTCGCCAATCCTGCCGCCGTACCTGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCTAAGTCTCTTGACGACGTTGCTGCTCACCGCGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGGAAGACATCAACCATTCTAGCAGTTGCCCGCAAGCTTTATGGAGCAAACTACCACAAGATGATACTCGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGAATTTTGTCAGTACTCAAAGCTTTTCATTTGGGGTTAAATCATCTGTAAAATTGGTACTTCTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATATACAAAAGGTACAAGGTTTACTCTTATCTGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGATAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGCTGGACGTCTCCGAGAGTGGATTAGCAGCCCTTGTTCGACTTTGTGGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGACGAGGCTGTATACCTATGTACAGGAAATCCAATGCCCAAAGACATAGAACAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGAGAATATCTGAAATAAAGACCAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACTATGTTTGTTTTTAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGAATGAGTTTTGGATGCAACGACAAATTACAACTCGGATTGCTCATCTCATCGTTTACTCAAGCCAGATATGCACTCGTTGGTGCTGCAGATTCGCTCACCAACCATCTGTCGCACGCACCCGTGTGCATCGATTAG 1134 43.65 MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALNILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVGAADSLTNHLSHAPVCID 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18466410 18471282 + Carg24427-RA Car04g02301 147726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02301 377 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Car04g02301 377 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Car04g02301 377 CDD AAA 60 198 - -
Car04g02301 377 SMART AAA_5 72 202 IPR003593 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02301 Car15g00613 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02301 Car-Chr4:18466410 Car16g00970 Car-Chr16:8093396 1.51E-58 dispersed
Car04g00567 Car-Chr4:3218293 Car04g02301 Car-Chr4:18466410 4.44E-12 transposed
Car04g01140 Car-Chr4:6565584 Car04g02301 Car-Chr4:18466410 3.10E-08 transposed
Car03g00180 Car-Chr3:3080394 Car04g02301 Car-Chr4:18466410 2.10E-28 transposed
Car15g00613 Car-Chr15:3395071 Car04g02301 Car-Chr4:18466410 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02301 K10756 - csv:101217230 641.343