Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02307 ATGAGCTTTTTGAGGCCGTTTATGTTGTATTCTACGCTGCGATGGATGACGTGCTTGAGTTGGGGTTTTTCAAGATGGCCTGGATTTGATGGCTTGCTCAGATGTCTTGTGGTTTTGATTTTGTGGTCTATGTATTTGGAAATTCATTTCATTCCATCGTCGTCAATGTATCCAACTCTTCGTATCGGAGATCGAATTCTCGTCGAGAAGGTCTCTTATTACATCAGAAATCCTTCTATAGATGACATTATAACCTTCCGAGACCCGACACAGCAATCTGGACGCAGAGAAGAGAACCTCGTTGTAAAGAGAGTTGTTGCTAAAGCCGGAGACATGGTTGAGGTTTGTGAGGGATGTCTCTATGTCAATGGAGTTGCTCAGGATGAAAGGTTCTTAGCGGAGCGGCCAACATACACCACAAAGTCAACTCAAGTTCCAAAAGGCCACGTTTACGTGTTGGGCGACAACCGCAACAACAGCTACGACTCCCATATTTGGGGACCTCTTCCCATCAAGAACATTATTGGGAGATACCTCTGGTCTTGCCACAACCCAACTACCAAATGA 567 44.97 MSFLRPFMLYSTLRWMTCLSWGFSRWPGFDGLLRCLVVLILWSMYLEIHFIPSSSMYPTLRIGDRILVEKVSYYIRNPSIDDIITFRDPTQQSGRREENLVVKRVVAKAGDMVEVCEGCLYVNGVAQDERFLAERPTYTTKSTQVPKGHVYVLGDNRNNSYDSHIWGPLPIKNIIGRYLWSCHNPTTK 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18579592 18582916 + Carg15741-RA Car04g02307 147732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02307 188 ProSitePatterns Signal peptidases I signature 3. 150 163 IPR019758 GO:0004252|GO:0016021
Car04g02307 188 ProSitePatterns Signal peptidases I serine active site. 53 60 IPR019756 GO:0004252|GO:0016021
Car04g02307 188 Pfam Signal peptidase, peptidase S26 35 178 IPR019533 GO:0004252|GO:0006465
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02307 K03100 lepB; signal peptidase I [EC:3.4.21.89] - csv:101221795 328.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02307 Car15g00606 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02307 Car-Chr4:18579592 Car11g00494 Car-Chr11:2679113 1.84E-51 dispersed
Car08g00253 Car-Chr8:1599593 Car04g02307 Car-Chr4:18579592 6.69E-06 dispersed
Car15g00606 Car-Chr15:3359784 Car04g02307 Car-Chr4:18579592 2.78E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g227 . . . . . . . . Cmo04g02501 Cmo15g00666 . . . . Sed01g3097 . . Bhi04g01876 Tan11g1248 Cmetu03g2013 . Hepe02g2219 . Lcy10g1247 Cla08g00618 Cam08g1032 Cec08g0621 Cco08g0733 Clacu08g0742 . Cre08g0550 . . . Cone20ag0430 . . . . . . . Bda01g01456 Bpe02g01653 . Bma01g00801 . . . . . . Car04g02307 Car15g00606 Cpe01g02069 . . . . . . . . . . . . . . . Lsi08g00458 . Chy03g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011233 1 1 0 1 1 1 2 1 1 1 1 1 0 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02307 Car_Chr04 FPKM 0.0 0.351708 0.238236 0.0 0.0 0.571039 0.36967 0.075094 0.0 0.157089