Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02314 ATGGGTTCATGTGATGACCCGGCTGTGATCGGGGAACCGTTTTGCGGCTCTGGTACTCGTCTGGTCAGCTGTTCGAGTCAACCTCTTCCCAAGCAGCAGTCACGCCAGGAGATGGCTTCCTTCCCATCTAGTTCTAGTGAGGGGCAGATGTTTGAACCAGTTAGGGAACTGGGAGTGATTATGAATAATGTCTGCACGAATGTATCGGGGCTAGCGGCTGAAGGGGAGGATTGGACATTTAGAGGCCCCGAACATGTAGATACTCTACTATTCGAGGGAAGGTTGGGAAGTGATTCCGGTTCGGGCGATAATGATCCCTATCTAAACGAGGAGAATGAGGCTTGCATCTTGGGGAATAGAACATTGAGCTTGGGTATGGAAGAGTCTCCAGACGTTGGTGGTTTGGTTGATATTTTGGGCTGTAAAACTACCATGGAAATGATGTCTTTAACTGGGTCAGTAGTAAATTCTGTTAAACCCGATGAAGTGGATAATAACACTTTTGCAATTGATGGCAGTGCAGAAGTTGAAAGAGATGATACAGTAGAAAAGGGTCCTATTTTAGCAAGGACGTGTACTTGTACAGATGACTTAAAATCTCCTAAAGTCTGTGAAATTGTTTCTAATTCAGCTTCTGCTGATGAATTGACAAGTGACTACATACAACAGAACGAGCTGGAAAATGATGGCACTGGTTGTTCGTTTTCAGAGGTCACCGATGGGATAACTGATGCTTCAGTTGTTATAGAAACAGACGTGTTGAATGAGATGTCCCCTTTACAGAGTGCTCAAGTACTATCAGTACGTTTGGGAGAATCAGTTGCCAATTATGATCAGTATATTTGCAATATGGACGGGGAGGGCTTCAGTGGTGGTATCTCTGGAGAAACAGTTATTAAAGTTGCTGATATGAACAGCAATCCTGAATTGTGCTTGCAGATGTTGCCTTCACAAGGCTGCGAGAAGATAAGGGAATGGTTTCAATCTGATGGTTCACCACTAACCAGTCACGCTCTAGAAAATGATCTGTGTGATGAAAAGCATGACAGTAATTCCTTATCCAAGTACGTTTCAGAGGTTGCAGAAGACGATATTGATGTCTTGACTAGTCATAATGGTGATGCTGGACAACCTATGGATCCCAAGATAGAAAATGACCATAATCTGGAGGAAGCTACTCTTCAAGTGAACCCATCTTCTAAGAGGAGTGGCCGGACGAAAACATCAAGCCAAAAAACTGTGACTAAAAGGGCATCCAGGAAAAGCAAAAAAAAAGTGTCAGAGGCACTGATTCTTGAGATTGCAAGGAGGAGGAGAAGCTCTATATCCAGGCCTGCTCGTCCTTCACCCTGGGGATCACTGGGTTATATTGTTCAGTCATTTGAAAGAATTGGTGATGTTCTAGTAAATCAAAGCCAGAAGCAAGGAAATAAGAAATCTGAAGGTAATCAAGGAGGCACCAAGCGGAATAAGAAACAGCCAAGTGAAAGTACACATAGATCAAGAAAAGGGATCCAAGGAAAATGTGCTACTTCAACTTCAACCAATCGTATTCGTTTGAAGGTTAAATTAGGGAAGAACGCAGGTCATAATTTTCTGAACATTGTGGTTCCTGAGATTGTTGATTCATCATTGTCTGCCAAGGGTAACAATTGCAATTATGGGGACGAATCGTATTGGGAAGGTAATTTGGAATTTCCACCATCAACCCTTGGCGTTGATGATCAAAAGCCTGATGAGGGGCCTTTAAGAAAGATCTCCTGCTACAACAGGAATCAGGAGAAAGAAGAGAAATGTCCAGATGCTTCTGTTGTCAAGGAACAATGTGCTAATAATGACTCAAGTTGCACCATTATTGTGGACAAGCCATCTGCAAAACATGCAAATGATAATCTCTGTGTTTCCTCCCATTTGGTTGAGCCTGTGGAAAGGGCAAGTGATGCTAGGAGTTTGGATCCTGGAACTTCACCTGATTCAGAAGTGATAAATTCAATCTTAGATATTCAAGTTGGAGCAATACGTCAGGAAAATTTTCAGGACTCAGTTTTGGCATCCTCAGACAATTTTGCCGCTTCTGGACATGTTACCAGTAGTAAGAATGGAAGGAAAGAGAAGCCCAGTGAGGTCGTTACTCATTCTCAGGAAGGTGGCACAGGTGCTTCTGCTTGCAGGAACAGGTCCAAAGCATCAAAGAAGCATGGAAAAAGACTGAATGTGGACAATCAGCTTGGTTCTGGGACTGAACTTCCAGAGGAGGCTTTGAAAGTGGAAGGCGCTCTCGAAGTTAAAGAATGTTGCAGAACAGATGTTGGCAGTGTCTTTCCTGAATCAGAGACTTTGAAAACATTTCTTCCTTCTCAATCTGCAAGGAAAAAACATACCAAAAATTCAAAACCTATTAAAACAAGTAAAGGCAGGTCCAAGACTACTTGCTCAAAAAGCAAAGTACAGAATGCTTCTAAAGAGAGGGTTTACCAACGGAAGTCTGTTAATAAGAGTAAAATCAAGAAGGGTGTATGCCAACAAGTTTTGACTGAAACGGAAAGTCACCAAGTAGTGGGACATTACCTTGTAGACAAGCCAGAGAAAAGCGATGACATCACTGCATCCACTGCGGCAGTAAATTTGAATGTGGTTCAGGGCGCTGTGAATGAGCAGTATACACCTCCTCGCAATGCTTGGGTGCTCTGTGATGATTGTCATAAATGGCGACGCATACCAGCTTCTCTTGTTGATAGTTTAGGACATGCAAGTTGCACATGGACTTGTAAGGACAATGTGGATAAAGCTTTTGCTGATTGCTCAATCCCACAAGAGAAGTCAAATGCAGAGATTAATGCAGAGTTGGAAATATCTGATGAATCTGGGGAAGAAAATGCTTCCAATAAACGGCTAACTTATAGGGAATTAGAGAGTTTTCATCCAACAACAGTGACGGCAGTTCCTCAGGAGAACAAATTTTCTTCAATTAGTAGCAATCAGTTTTTGCACCGCAGTCGTAAAACTCAAACTATTGATGAGATAATGGTTTGTCATTGCAAACCATCTTTGGATGGCCGGTTAGGATGTGGAGATGAATGCTTGAATCGAATGCTCAGTATTGAATGTGTCCGAGGTACATGTCCTTGCGGAAACCTTTGTTCTAATCAACAGTTCCAGAAACGCAAATATGCCAAATTACGGTGGTTGCGATGTGGAAAGAAAGGTTATGGGCTGCAGTGTCTTGAAGATATATCAAAAGGACAATTTCTCATCGAGTATGTTGGAGAGGTTCTTGACATGCATGCTTATGAGGCACGTCAAAAGGAGTATGCATTGAATGGTCATCGACATTTTTACTTCATGACACTCAATGGCAGTGAGATCATAGATGCATGTGGCAAGGGAAATTTGGGGCGTTTCATTAACCACAGCTGTGATCCAAATTGCCGCACAGAAAAGTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCGCTAAGTGATATTAAGAAGGGTGAAGAGGTGACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCCAAAAAATGTTATTGTGGTTCTTCCCATTGTCGAGGTTATATAGGTGGTGACCCCCTCAATTCTGAGGTCATTATTCAAAGTGATTCGGATGAAGAATTTCCAGAACCAGTGATGGTTCGTGCAGATGGTAGAAGTTGGAATAATAGCTTGCAAACTGCAGTTAGTTCGTTGGATGGTGCTAAAATGCAACCCTCAGAGCGTATAAGAGGGGTTAAGGATAAGAGAGAACAACCTATCAGTATAGCTATCGAATCGAAGATTTCAGAACAAAAAGAGGATCCTCTTAAGGTTTCTGCTTTGAAAAGTTCAGAAGAAAAAGAGGATCCTCTTAACCTTTCTGCCTCTACCATTTCACCATTGCACAGTTCATTGGAATTTGAAGACTCAAAGGTAGCATCACCGATTCCACTGCCGGAAATAACCCAGCAAACTGAAGATGTGACGAGCAAACCTGTGTTTGTTGATCAGACAGAGATATCTCTTATGGACAGTATTTCCAACAAAAACACATGCTCTAATGAGCAGGAAGCAAAGTTATCATTTGACGACTTTGATGCTCGTAAGAAATCCAAGTTGGATGCTGTTGAAGATAAGAAAGTGTATATAAAGTTGCATCCTCAAATGAAAACTTCACGTAAACCAGGTTCCATCAAGAAAGGAAAAGTTTGCTCGGTAGAGAAAGTTCAAATAACTAACAAGCCCCAGATTTCGTCTGTAAAGCCCAAGCGATTGATTGAAGGTTCTTCAGGTAACCGCTTTGAGGCAGTTGAGGAGAAGCTTAATGAACTCCTGGATGCTGAAGGGGGAATTAGCAAAAGAAAAGACGCCCCTAAAGGGTACTTAAAGCTTCTTCTCCTGACTGCTGCATCAGATGCAAGTGCCAGTGGTGAAGCAATTCAAAGCAATCGAGATCTTTCAATGATCCTTGATGCTCTTTTGAAGACAAAATCACGAGTAGTATTGACTGACATAATAAACAAAAATGGTTTGCGGATGTTGCATAATATAATGAAGCAGTACAGAAGTGACTTCAAAAAGATACCTATTCTCCGGAAACTTTTGAAGGTCTTAGAATACTTGGTGATGAGAGAGATACTCACATCAGAGCTTATTAATGGAGGTCCTCCTTGCCCTGGAATGGAAAGTTTGAGGGTGTCTTTACTGTCACTCACAGAGCATGACGACAAACAGGTACATCAAATTGCCCGAAGTTTTCGAGACAGATGGTTCCCCAGACATAATAGAAAATTTGGTTACTCTGAGAGGGAGGATGGGAGATTGGAAGCTTACAGGGGTTCAAACTGCAGTAGGTTTACAGCATCTCACAGTTACCGGCATGATCAGGATTCTAGACCCACAGATGCCATTGACTGTGTTAAGCAGTCGTCAATTCCAGTGTCTCTTCCAGATGCTCATCCTGCAGAGGTTTGTTCTGTGGCTTCTACAGCTGGTCATTTATTGGATGGACAAAAAATTCGTAAGCGTAAGAGTAGATGGGATCTGCCTGCAGACACAAGCCTAGATCTGAGATTCAAGGAGCAGAAGCTTGAATCAACATTGGTGCAGCAATTTGATTCCAGCCAAATAGATAGTGTTGGAGTGGCACCAATGTTGATAGACAAGGTAAACAGTGTAGATAAAGACTCCTCCCTCTCTGATTCTGTGGAAGTATGTTGTCGCCAAGACGAAGATATTAGGGCAGATAGTGCAGTGCAAAACATCCCTGAAGATATTCCTCCTGGATTTTCATCTCCCTTCAATCTCCCTGTGGCTTCCTCAAGTCCTTTTTCAACAGTTTTAGATCCTCCTCGACAGAGTATTGGCAATTTGAGTTGTGCTTTTTCCACGGTTGGGCATCCACAGGAAAGATATATTTCTCGCTTGCCTGTGTCCTATGGAATTCCGTTTTCTATTGTTCAGCAATGTGGAACATCCTGTGCAGAGAATATGGAGTGTTGGGATGTTGCTCCTGGTGTGCCCTTTCATCCTTTTCCACCCTTGCCACCATATCCCCGGGGTACGAGAGACCCACTAATGTCTGCCTGTGGTACTGCCGATAGACAATGTTCTCAAGAAGGGCAGGCGGACAGCCACGATTCTCGAACTTCTTTCTCAGAAGAAGGCACTCCTTGTACAAGTACTACATACCAGCAGGATTTGTGCATTCTATCAAACAACCAACAGATACTAAAACAGGCTAAGGAATCATCATATGATTTAGGAAGAAGGTACTTTAGGCAGCAAAAGTGGCGTAATACACAGTTTGGCCCCCATTGGTCACAGAGAAGGAATCAATGGGGATACCAGGGAAACTTCAGGGGTGGAGCAAGCACTACGGGTGATGAAAATATACCAAACGAAGGGATAAATCCATATTGCTCGGATGAACCAAGCGTTAGAGTGGATAAAGCTAATGACGATTCTCATCAGCATGTGCAAAACCAAAATCAGCGTTAA 6009 42.67 MGSCDDPAVIGEPFCGSGTRLVSCSSQPLPKQQSRQEMASFPSSSSEGQMFEPVRELGVIMNNVCTNVSGLAAEGEDWTFRGPEHVDTLLFEGRLGSDSGSGDNDPYLNEENEACILGNRTLSLGMEESPDVGGLVDILGCKTTMEMMSLTGSVVNSVKPDEVDNNTFAIDGSAEVERDDTVEKGPILARTCTCTDDLKSPKVCEIVSNSASADELTSDYIQQNELENDGTGCSFSEVTDGITDASVVIETDVLNEMSPLQSAQVLSVRLGESVANYDQYICNMDGEGFSGGISGETVIKVADMNSNPELCLQMLPSQGCEKIREWFQSDGSPLTSHALENDLCDEKHDSNSLSKYVSEVAEDDIDVLTSHNGDAGQPMDPKIENDHNLEEATLQVNPSSKRSGRTKTSSQKTVTKRASRKSKKKVSEALILEIARRRRSSISRPARPSPWGSLGYIVQSFERIGDVLVNQSQKQGNKKSEGNQGGTKRNKKQPSESTHRSRKGIQGKCATSTSTNRIRLKVKLGKNAGHNFLNIVVPEIVDSSLSAKGNNCNYGDESYWEGNLEFPPSTLGVDDQKPDEGPLRKISCYNRNQEKEEKCPDASVVKEQCANNDSSCTIIVDKPSAKHANDNLCVSSHLVEPVERASDARSLDPGTSPDSEVINSILDIQVGAIRQENFQDSVLASSDNFAASGHVTSSKNGRKEKPSEVVTHSQEGGTGASACRNRSKASKKHGKRLNVDNQLGSGTELPEEALKVEGALEVKECCRTDVGSVFPESETLKTFLPSQSARKKHTKNSKPIKTSKGRSKTTCSKSKVQNASKERVYQRKSVNKSKIKKGVCQQVLTETESHQVVGHYLVDKPEKSDDITASTAAVNLNVVQGAVNEQYTPPRNAWVLCDDCHKWRRIPASLVDSLGHASCTWTCKDNVDKAFADCSIPQEKSNAEINAELEISDESGEENASNKRLTYRELESFHPTTVTAVPQENKFSSISSNQFLHRSRKTQTIDEIMVCHCKPSLDGRLGCGDECLNRMLSIECVRGTCPCGNLCSNQQFQKRKYAKLRWLRCGKKGYGLQCLEDISKGQFLIEYVGEVLDMHAYEARQKEYALNGHRHFYFMTLNGSEIIDACGKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALSDIKKGEEVTFDYNYVRVFGAAAKKCYCGSSHCRGYIGGDPLNSEVIIQSDSDEEFPEPVMVRADGRSWNNSLQTAVSSLDGAKMQPSERIRGVKDKREQPISIAIESKISEQKEDPLKVSALKSSEEKEDPLNLSASTISPLHSSLEFEDSKVASPIPLPEITQQTEDVTSKPVFVDQTEISLMDSISNKNTCSNEQEAKLSFDDFDARKKSKLDAVEDKKVYIKLHPQMKTSRKPGSIKKGKVCSVEKVQITNKPQISSVKPKRLIEGSSGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASDASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNIMKQYRSDFKKIPILRKLLKVLEYLVMREILTSELINGGPPCPGMESLRVSLLSLTEHDDKQVHQIARSFRDRWFPRHNRKFGYSEREDGRLEAYRGSNCSRFTASHSYRHDQDSRPTDAIDCVKQSSIPVSLPDAHPAEVCSVASTAGHLLDGQKIRKRKSRWDLPADTSLDLRFKEQKLESTLVQQFDSSQIDSVGVAPMLIDKVNSVDKDSSLSDSVEVCCRQDEDIRADSAVQNIPEDIPPGFSSPFNLPVASSSPFSTVLDPPRQSIGNLSCAFSTVGHPQERYISRLPVSYGIPFSIVQQCGTSCAENMECWDVAPGVPFHPFPPLPPYPRGTRDPLMSACGTADRQCSQEGQADSHDSRTSFSEEGTPCTSTTYQQDLCILSNNQQILKQAKESSYDLGRRYFRQQKWRNTQFGPHWSQRRNQWGYQGNFRGGASTTGDENIPNEGINPYCSDEPSVRVDKANDDSHQHVQNQNQR 2002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18629551 18653001 + Carg15748-RA Car04g02314 147739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02314 2002 MobiDBLite consensus disorder prediction 1276 1298 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 469 512 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 803 819 - -
Car04g02314 2002 Pfam SET domain 1069 1175 IPR001214 GO:0005515
Car04g02314 2002 MobiDBLite consensus disorder prediction 1867 1894 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 394 413 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 1868 1894 - -
Car04g02314 2002 ProSiteProfiles AWS domain profile. 1006 1056 IPR006560 GO:0005634|GO:0018024
Car04g02314 2002 ProSiteProfiles Zinc finger CW-type profile. 888 942 IPR011124 GO:0008270
Car04g02314 2002 ProSiteProfiles SET domain profile. 1058 1175 IPR001214 GO:0005515
Car04g02314 2002 MobiDBLite consensus disorder prediction 1939 2002 - -
Car04g02314 2002 Pfam AWS domain 1020 1055 IPR006560 GO:0005634|GO:0018024
Car04g02314 2002 MobiDBLite consensus disorder prediction 394 425 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 784 822 - -
Car04g02314 2002 Pfam CW-type Zinc Finger 894 940 IPR011124 GO:0008270
Car04g02314 2002 MobiDBLite consensus disorder prediction 1939 1969 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 25 48 - -
Car04g02314 2002 ProSiteProfiles Post-SET domain profile. 1183 1199 IPR003616 -
Car04g02314 2002 MobiDBLite consensus disorder prediction 1276 1292 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 469 491 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 693 745 - -
Car04g02314 2002 MobiDBLite consensus disorder prediction 711 725 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02314 - - - csv:101204735 2950.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02314 Car15g00596 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02314 Car-Chr4:18629551 Car10g00410 Car-Chr10:2052302 1.31E-36 dispersed
Car15g00543 Car-Chr15:2965011 Car04g02314 Car-Chr4:18629551 7.14E-52 transposed
Car15g00596 Car-Chr15:3297937 Car04g02314 Car-Chr4:18629551 1.77E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3447 PF00856 SET 7.60E-19 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02314 Car_Chr04 FPKM 10.682243 12.818543 9.720688 9.79912 8.894457 10.415243 9.039651 13.410963 14.17356 11.583593