Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02316 ATGAGATTGCTCCAAAATGGGGTCGCCGGCGAGCCACTGCAAGTTGATTCCAGCCGTTCTGTGCTTGTGGGCATGAAATTAGACTCCCATAGTAGAGAGCTGCTAACTTGGGCTTTGGTTAAGGTCGCTCAACCGGGTGACCTTGTGATCGCTCTTCATGTTCTTGGCAACGATGAAATCGTTAATCGCGATGGGAAATCTTCGCTTCTTTCTCTTGTGAAAACGTTCGACTCTGTTCTTGCTGTTTATGAAGGTTTCTGTAACTTGAAGCAGGTGGATTTGAAGCTCAAAATCTGCAGGGGAGCATCGGCTAGAAAAATCTTAGTTCGTGAAGCAAAATCGTATTCTGCATCTAATTTAATTGTTGGGACTGCTCGAAAACACCATAAAATCCGTTCATCGAGTTCTGTTGCCAAGTACTGCGCTAAAAAATTGCCCAAACATTGTTGGGTACTCGCTGTTCATAATGGGAAAGTGACATTTGAACGATCTGCAGTGGCTACAGGGGACTGCCAAGGAAATAAAGTTGAAAGTGATCTGGGAATTGGTAAGGATTCGGATCAGGGATTTGCAAAAGGCGTAATGGATAGTTCTTATAAACCGAACTGTTCGATTTGTGGATCGGAATCGAGTTCTTTGGTACAATCTGCAGTGATATCTTCTGGTGATGGAGATGAACATGATGAATCTTTAGCCATTGTTCCTGTTCAAAACGTTGAGGTAGCTTCGAGTTCAATTACTAAGTTGATCAAGGAATCGCCTGAAGTACAACCCGGTTGGCCTCTTCTTCGCCATGCCGATCAATCCGGTCGACGAGCTTCGTCCGACAAAGCCTTGGCCAAGCAAATCTCTGTAGTTCAATGGGCAATGAGGTTGCCTAACCGGTCTGCTTCAGACCCTGCTGCTTTGGATTGCAATTCTAATACATCTGGTCAAGCTACGGTTCTGGTCGGTTCTGAACCGGTGACTTCTTCACTCTCCCCCAACCCCAGTTCCATACCGAAAGAATTGGAAGGTTTTCATGATAAATACTCCTCGTCGTGTAGATTGTTTAGTTATCAAGAACTCGTTACAGCAACGTCGAATTTCTTACCTCAAAACTTGATAGGGAAAGGAGGAAGCAGCCAGGTTTTTAGAGGTCGTCTTCCCGACGACAACGAGGTTGCTGTCAAGATCTTGAAGCCATCGGAAGACGTTCTAAACGAGTTTGCTGTGGAAATCGAGATCATTACGTCCTTACGCCACAAGAATATCATTTCTCTCTTGGGATTTTGCTTTGAAGATAGTAAATTCCTGTTGGTTTATGACTTCCTGTCAAGAGGATGCCTTGAAGATATCCTTCATGGGAATGGAAAGAGTTCGAACGCATTTGGCTGGTGCGAAAGATATAACGTAGCCGTCGGTGTAGCCGAGGCGTTGGATCATCTTCACAGCGACTCTCAGCACGTGATCCATAGGGACGTTAAATCGTCGAACGTTTTGTTATCTGACAATTTCGAACCGCAGATCCTCATAGTACTCTTTCTTTCTTCAGTTATCAGATTTCGGGCTGGCGAAACGAGCATCAAAATCATCGCACGTAACCTGTACCGATGTTGCAGGAACGTTCGGGTTCGTATCTCTAAGCCATATGCAATGATTCGGTTTGCTATAGTTTTCGACAATGTTGTTAATGTCGTTTGTTGCAGTTATCTGGCTCCGGAGTATTTCATGTACGGTAAGGTAAGTGACAAGATTGATGTCTATGCTTATGGTGTGGTACTCCTTGAACTTCTTTCGGGGAGAAAACCGATAAGTACCGAGTATCCGAAAGGACAAGAAAGCCTAGTCATGTGGGCAAGGCCAATTTTAATCGACGGGAAGGTGTCTCGGTTACTCGATCCTAACTTGGGAAGTAACTACAACAAGGACGAGATGGAGCGTGTCGTTTTAGCAGCTAGCCTTTGTATCAGACGCACTCCACGAGCTAGGCCTCCAATGAGCCATGTTCTAAAACTTCTCCAAGGCAACATAGACGTAACCAAGTGGGCAAGGCAACAGATCAATGCTGTAGAGGATTGCAACGCTCTAGACGATGAAGTATGTCCTCGATCCGATATTCAATCACATCTCAACGTTGCATTGCTCGACGTTGATGACGACTCGCTCTCCCTGAGTAGCATCGAGCAGAGTATCTCAATGGAGGACTATTTGCAAGGAAGGTGGAGCCGTTCATCAGGGTTCGACTAA 2229 45.31 MRLLQNGVAGEPLQVDSSRSVLVGMKLDSHSRELLTWALVKVAQPGDLVIALHVLGNDEIVNRDGKSSLLSLVKTFDSVLAVYEGFCNLKQVDLKLKICRGASARKILVREAKSYSASNLIVGTARKHHKIRSSSSVAKYCAKKLPKHCWVLAVHNGKVTFERSAVATGDCQGNKVESDLGIGKDSDQGFAKGVMDSSYKPNCSICGSESSSLVQSAVISSGDGDEHDESLAIVPVQNVEVASSSITKLIKESPEVQPGWPLLRHADQSGRRASSDKALAKQISVVQWAMRLPNRSASDPAALDCNSNTSGQATVLVGSEPVTSSLSPNPSSIPKELEGFHDKYSSSCRLFSYQELVTATSNFLPQNLIGKGGSSQVFRGRLPDDNEVAVKILKPSEDVLNEFAVEIEIITSLRHKNIISLLGFCFEDSKFLLVYDFLSRGCLEDILHGNGKSSNAFGWCERYNVAVGVAEALDHLHSDSQHVIHRDVKSSNVLLSDNFEPQILIVLFLSSVIRFRAGETSIKIIARNLYRCCRNVRVRISKPYAMIRFAIVFDNVVNVVCCSYLAPEYFMYGKVSDKIDVYAYGVVLLELLSGRKPISTEYPKGQESLVMWARPILIDGKVSRLLDPNLGSNYNKDEMERVVLAASLCIRRTPRARPPMSHVLKLLQGNIDVTKWARQQINAVEDCNALDDEVCPRSDIQSHLNVALLDVDDDSLSLSSIEQSISMEDYLQGRWSRSSGFD 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18659144 18662593 + Carg15750-RA Car04g02316 147741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02316 742 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Car04g02316 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Car04g02316 742 Pfam Universal stress protein family 19 151 IPR006016 -
Car04g02316 742 Pfam Protein kinase domain 367 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02316 742 ProSiteProfiles Protein kinase domain profile. 363 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02316 - - - csv:101203034 1019.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02316 Car15g00595 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00467 Car-Chr2:3637438 Car04g02316 Car-Chr4:18659144 0 dispersed
Car04g02316 Car-Chr4:18659144 Car20g00910 Car-Chr20:9867795 0 dispersed
Car15g00595 Car-Chr15:3287405 Car04g02316 Car-Chr4:18659144 0 transposed
Car15g00594 Car-Chr15:3285656 Car04g02316 Car-Chr4:18659144 4.74E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88844 PF00069 Pkinase 4.80E-32 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02316 Car_Chr04 FPKM 3.983629 4.796485 2.370246 2.983498 4.697653 4.024726 4.237061 0.996806 0.855925 0.821202