Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02324 ATGCACTTCCTGCTAAAGAATCTTCGTGGTGCGCACAGAGCTTCGTTTTTTCATTACTCCTATCTGATTGACCAGTGTTTAGCGTCTAGATCTGTTCATATTGCGAAAACAATCCACGCTCAATTGCTAAAGCTTGGCCTTAACAACAATACTTTTCTGGGTAATCGCTGTCTTCAGCTATACGCGTTATTTGGTCCCGTCCATGAATTTTTTAGGGTATTTGGTGATATCAAAGAGAAGAATATTGTATCTTGGAACATATGCTTGAAGGGGTTGTTTAGATTTGGTTATGTCAATGGTGCACGCAATCTGTTCGATGAAATGCCGGAGAGGGACATTGTTTCTTGGAATTGCATGATGTCTGGCTGCGTTTCTTCTGGGTTTGCTAATAAGGCTATGGATGTGTTTCTGGAGATGCAAGATGCTGGTTTTAGACCAAGTGAATATACGTTTTCAATTTTGCTTTCGGTTGTGTCGTGTCCTAGTCATGGCAAGCAAATTCATGGCAGTATGATTCGAAGTGGTGTTGATGTGTCAAATGTGGTTCTTGGGAATTCATTGATTGATATGTATGGAAAATTCGGCCTTGTCGATTATATGTTTGTCATGTTTTATAGTATGGAAAAGGTGGATGTTATCTCTTGGAACTCTTTGATTTTGGGCTGCCACAGATCAGGTTTTAGAGTATTGGCACTAAATCAGTTCTTTCTTATGAGAGCCACTGGGCACTCTCCTGATCAGTTCACTGTATCAATAATGATAAGTGTATGTTCTTTCCTCCAAGAATTGGAACTGGGTAAGCAATTTCTTGCTTTCTGTTTCAAGATGGGATTTACTTCTAACAGCATTGTACTTAGTGCTGCTATTGACTTGTTTTCCAAATGCAACAGCTTGAGGGATGCAGTGCAGCTTTTTGAAGAAGCCAATCAATGGGATCAAGCTCTTTGTGATGCCATGATCTCAAGCTTGGCATGGCATGGTCATTGGAGGGATTCCATGTGGCTTTTTGTGTATGCCTTAAGGGAGAACCTCAGGCCAACAGGGATTACACTCAGCAGTGTCCTGAGCTCCATTTCAGTCTTCACACCTCTGGACTTAGGTAGTCAAATTCATAATTTGGTTCTTAAGTTGGGTTTTGAGTCTGATACCGTCGTCACTAGTTCGCTCGTCGACATGTATGCTAAAGTTGGATTAATTGACAACGCCATGAAAGTCTTTACGGATATGCCTTCGAGAGATTTAATATCTTGGAACACTATGATTATGGGTCTGGTTAACAATGGTAAATACTTTGAGGCCTTAGGCACACTTGAAAATTTGGTTAGGGAAGGTGTAGTGGCAGATAGGATAACACTAGCTGGAGTCTTATTAGCTTGCAGCCATGCTGGTTTTGTTGATGAGGGGCTAAACATCTTCTCTATAATGGAAAACAAACATGGGGTCGTACCGACGAATGAGCATTATACTTGTGTGGTGGACTTACTGAGTCGGGCTGGTAAATTCAAAGAAGCAGTTAATATCATCGAAACAACATCGTGCCAACCTACTTCTACGTTTTGGATATCACTACTAGATGCGTGTGCTATTCATGGAGACATGAACACCATTGAAAGAGTTGCGGAGAGGGTGATGAAGCTGGAACCTCAATCATCCTTACCGTATTCGGTGCTGGCTCGAGTATATGCAGCGAGAGGCCGATGGGAAAGCACTGTTCGTGTCAGTAAGGCCATGGAGAATATAGCTGCACAGAAGGTGAAGGCTTGCAGCTGGGTTGTGATCAAAGATCATGTGTATGCTTTCCAGGATGACCGGCTGCAGCATCTGGGGGGAGAAAGTTTGATTTCTGCGTTGGAGCTGATTGTTTGGGAGGTGGAATATGGGAATGAACACGAACAGTATGTTTAA 1905 42.36 MHFLLKNLRGAHRASFFHYSYLIDQCLASRSVHIAKTIHAQLLKLGLNNNTFLGNRCLQLYALFGPVHEFFRVFGDIKEKNIVSWNICLKGLFRFGYVNGARNLFDEMPERDIVSWNCMMSGCVSSGFANKAMDVFLEMQDAGFRPSEYTFSILLSVVSCPSHGKQIHGSMIRSGVDVSNVVLGNSLIDMYGKFGLVDYMFVMFYSMEKVDVISWNSLILGCHRSGFRVLALNQFFLMRATGHSPDQFTVSIMISVCSFLQELELGKQFLAFCFKMGFTSNSIVLSAAIDLFSKCNSLRDAVQLFEEANQWDQALCDAMISSLAWHGHWRDSMWLFVYALRENLRPTGITLSSVLSSISVFTPLDLGSQIHNLVLKLGFESDTVVTSSLVDMYAKVGLIDNAMKVFTDMPSRDLISWNTMIMGLVNNGKYFEALGTLENLVREGVVADRITLAGVLLACSHAGFVDEGLNIFSIMENKHGVVPTNEHYTCVVDLLSRAGKFKEAVNIIETTSCQPTSTFWISLLDACAIHGDMNTIERVAERVMKLEPQSSLPYSVLARVYAARGRWESTVRVSKAMENIAAQKVKACSWVVIKDHVYAFQDDRLQHLGGESLISALELIVWEVEYGNEHEQYV 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18742727 18744631 + Carg15758-RA Car04g02324 147749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02324 634 Pfam PPR repeat family 112 156 IPR002885 -
Car04g02324 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 412 IPR002885 -
Car04g02324 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Car04g02324 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Car04g02324 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 111 IPR002885 -
Car04g02324 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Car04g02324 634 Pfam PPR repeat 185 209 IPR002885 -
Car04g02324 634 Pfam PPR repeat 387 413 IPR002885 -
Car04g02324 634 Pfam PPR repeat 487 508 IPR002885 -
Car04g02324 634 Pfam PPR repeat 415 445 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02324 - - - csv:101210612 981.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02324 Car-Chr4:18742727 Car16g01219 Car-Chr16:10243706 1.52E-24 dispersed
Car04g02324 Car-Chr4:18742727 Car04g00791 Car-Chr4:4568583 2.24E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011857 1 2 0 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02324 Car_Chr04 FPKM 14.13265 16.007906 14.670855 15.452169 15.588852 14.296236 14.704142 19.386206 17.400663 16.6395