Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02328 ATGGTGAACGATACTGAGTATTATGATGTTCTCGGTGTTCGTCCTTCTGCTTCCGAGGAGGAGATACGTAAGGCCTATTATCTCAAGGCGAAACAAGTCCATCCGGATAAGAATTTGAATGATCCTCAAGCTGCTGATAGGTTTCAGGTGCTTGGTGAAGCTTATCAAGTTTTGAGTGATGCAGTCCAAAGAGAGGCATATGATAGGAATGGGAAGCACGGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTCTTTGCACTTCTATTTGGAAGTGAATTATTTGAGGACTACATCGGACATTTAGCGGTAGCATCAATGGCTTCATCTGAATTAGAGAGCGAAACTGGTAATCCAGAGAGACTACATGATAAGTTGAAGGCTGTCCAGAAAGAAAGAGAAGAAAAACTTGCACGTGTGCTTGAGGGTTTTCTTAATCAATATGTTCAAGGTGACAAAGATGGATTCTTACGGCATGCTGAATCTGAAGCCAAAAGACTTTCAAATGCGGCTTTTGGTGCTAGTATATTACACACTATAGGCTACATTTATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAGAGTCATTTATCTTGGCGTGCCATTTGTGGCTGAATGGTTTCGCAACAAGGGACATTTTTGGAAGTCACAGATAACAGCTGCAAAAGGTGCTTTCCAGTTGTTACAACTTCAAGATGATATTTCCCGGCAGTTTAAAATGGATGGTAGTGGCCCAGGAAATGATATTGAATCGCATATACGAGCGAATAAAGACACATTCCTGAATTCTTTGTGGAAGCTTAACGTAGTGGACATTGAACTGACTCTTGTAAATGTGTGCCAGATGGTCCTACGGGATAATACTGTTAAAAAGGAAGAACTAAAAGCCCGTGCTCTGGCAATGAAGATTCTTGGAAAGATATTCCAGCAGGAGAAGCATGCACAAAATGGTGGAACGTCAAGAAAGAAAAGTGCTGCTGCAGTAGATGACGATGGAACGAGTTCAGAGAGCAGCGATGATGAGGATCCCCAGAGACCACTATCATATCGAACTCCTTTTCTTACTCAGGCAAGTGGATCACCTCTTCTCTCCCTACTCAAAACCTAA 1113 42.41 MVNDTEYYDVLGVRPSASEEEIRKAYYLKAKQVHPDKNLNDPQAADRFQVLGEAYQVLSDAVQREAYDRNGKHGITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESETGNPERLHDKLKAVQKEREEKLARVLEGFLNQYVQGDKDGFLRHAESEAKRLSNAAFGASILHTIGYIYSRQAAQELGKRVIYLGVPFVAEWFRNKGHFWKSQITAAKGAFQLLQLQDDISRQFKMDGSGPGNDIESHIRANKDTFLNSLWKLNVVDIELTLVNVCQMVLRDNTVKKEELKARALAMKILGKIFQQEKHAQNGGTSRKKSAAAVDDDGTSSESSDDEDPQRPLSYRTPFLTQASGSPLLSLLKT 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18760396 18763476 - Carg15762-RA Car04g02328 147753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02328 370 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Car04g02328 370 MobiDBLite consensus disorder prediction 351 370 - -
Car04g02328 370 Pfam X-domain of DnaJ-containing 131 321 IPR026894 -
Car04g02328 370 Pfam DnaJ domain 6 68 IPR001623 -
Car04g02328 370 MobiDBLite consensus disorder prediction 314 370 - -
Car04g02328 370 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02328 - - - csv:101219818 651.744
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02328 Car15g00585 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02328 Car-Chr4:18760396 Car20g00716 Car-Chr20:4139429 1.64E-121 dispersed
Car09g00005 Car-Chr9:17533 Car04g02328 Car-Chr4:18760396 1.01E-151 transposed
Car19g00588 Car-Chr19:7277459 Car04g02328 Car-Chr4:18760396 1.33E-09 transposed
Car15g00585 Car-Chr15:3230268 Car04g02328 Car-Chr4:18760396 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02328 Car_Chr04 FPKM 19.879747 23.275743 20.921022 22.101118 16.659567 12.615349 14.981355 21.781399 21.267466 22.294989