Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02329 AAAGACTTCCAAATAAGAAATATCCAGGGTGTTATCGGGCAGCTTCGGTCTAAACTTCGTTACCCAACTAAACTAAATCGACTATTTCTCTTTCTTTGCTCTCGTCTAGCCGTAGGAGCATCCGCCGCCGCCGTTACAAAGTCCAACTCTTCCACGGAGGAAGCTCTGTTTCCTCTACCTTCTCCCTCTGCTCCCCCGCTTGGGGATGCCGATCAAGAGACCACTCTACAACCGCCTGAGCCATCTTCCTCTCCACCGCCGCCGGTAGTTTCAGAAATTATAATGTTCTCGAGGGATTCTAACGTTCTATTCAGTGGCGGCGGTATCAGTTTTCTCCATGGAAACCATACTGGAAAGTTTAGCTATGGCTATTCTAGTTTCAAGGGTAAAAGGGCATCAATGGAGGACTTCTATGAAACTAGAATTTCTGAAGTCGATGGGCAGATGGTTGCTTTTTTTGGTGTTTTTGATGCTATTCCCCTCTCTATTGATCACAAGCCTGATCGATCAGATGAACGGCGAAGGATTGAAGATGCTGGAGGTTTCATTCTTTGGGCTGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGATAAGCTACTCAAACGATACGTTGTTGCTGATCCCGAAATTAAGGAAGAAGAAATCCCCAGTGTAGACTTTATAATTATTGCAAGCGATGGACTTTGGAATGTCATATCAAATGAGGAAGCTGTATCATTAGTGCAACACATCCAAGATGCAGAAATGGCTTCAAGAAAACTCATTCAAGAAGCTTATGCACGAGGGAGTACCGACAACATTACGTGTGTCATCGTACAATTTGGTTTATCATAA 852 44.48 KDFQIRNIQGVIGQLRSKLRYPTKLNRLFLFLCSRLAVGASAAAVTKSNSSTEEALFPLPSPSAPPLGDADQETTLQPPEPSSSPPPPVVSEIIMFSRDSNVLFSGGGISFLHGNHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDAIPLSIDHKPDRSDERRRIEDAGGFILWAGTWRVGGILAVSRAFGDKLLKRYVVADPEIKEEEIPSVDFIIIASDGLWNVISNEEAVSLVQHIQDAEMASRKLIQEAYARGSTDNITCVIVQFGLS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18764937 18769609 - Carg15763-RA Car04g02329 147754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02329 283 MobiDBLite consensus disorder prediction 53 90 - -
Car04g02329 283 ProSiteProfiles PPM-type phosphatase domain profile. 1 280 IPR001932 -
Car04g02329 283 Pfam Protein phosphatase 2C 159 273 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02329 K17506 PPM1L, PP2CE; protein phosphatase 1L [EC:3.1.3.16] - csv:101220053 229.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02329 Car15g00584 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02329 Car-Chr4:18764937 Car09g00337 Car-Chr9:1867742 4.51E-14 dispersed
Car15g00584 Car-Chr15:3224526 Car04g02329 Car-Chr4:18764937 6.36E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1180 . . Bda01g00652 . . . . . Cmo04g02531 Cmo15g00643 . . . . . . Cpe13g00656 Bhi04g01832 . . . Hepe02g2750 . . Cla08g00652 Cam08g1082 Cec08g0667 Cco08g0776 Clacu08g0785 . Cre08g0591 Cone4ag1446 Cone7ag1486 . . . . . Cme03g00427 . . . . . . . . . . . . . Car04g02329 Car15g00584 . . . . . . . . . . . . . . . . Lsi08g00511 . Chy03g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001693 2 3 2 2 2 1 4 1 2 2 2 1 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 8 1 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02329 Car_Chr04 FPKM 9.090278 0.0 9.280027 10.50701 9.298134 0.0 8.455214 13.919529 10.437919 13.159553