Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02331 ATGGCGCTCGACAACTGTATACAACTGAGCACCGCCGCCGCCATGTATGGCACCACTTCCATCCCCAAATCTCACCCATTCTCTTCCACTTTCCACCAAAAGCCAACTCTCTCCCTTCAACGCCTCAACAAATTCCCCACTTCCACTGCGCGATTCAAGTCCTTCTCTACTTCCACCTCCGTCTCCTCTTTCGGCAAATCCCGCTCCGTCACCTGTAAAGCTCGCGGCGCCGTTGACGACGTGAAAGAGGTTACAGAGTCGAGTTGGAATGAGTTGGTGGTGGAGAGTGAAAAGACGGTGCTGGTGGAATTTTGGGCGCCGTGGTGTGGACCGTGTAAGATGATTGAGCCAGTGATTAGGGAATTGGCGCAGGATTATGCAGGGAAAATCGTGTGTTTGAAGCTCAATACAGACGCCAGCCCAAATGTAGCCTCGAAATATGGGATTAGAAGCATTCCCACAGTTCTGTTCTTCAAGAATGGACAGAAGAGAGAGGGCGTCATTGGGGCTGTACCCAAATCCACCTTGTCCGCCTCCATTGACAAGTATCTCGAGGTTTGA 561 51.52 MALDNCIQLSTAAAMYGTTSIPKSHPFSSTFHQKPTLSLQRLNKFPTSTARFKSFSTSTSVSSFGKSRSVTCKARGAVDDVKEVTESSWNELVVESEKTVLVEFWAPWCGPCKMIEPVIRELAQDYAGKIVCLKLNTDASPNVASKYGIRSIPTVLFFKNGQKREGVIGAVPKSTLSASIDKYLEV 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18777941 18778814 + Carg15765-RA Car04g02331 147756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02331 186 Pfam Thioredoxin 81 182 IPR013766 -
Car04g02331 186 ProSiteProfiles Thioredoxin domain profile. 46 185 IPR013766 -
Car04g02331 186 ProSitePatterns Thioredoxin family active site. 101 119 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02331 K03671 trxA; thioredoxin 1 - csv:101218257 267.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02331 Car15g00581 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00849 Car-Chr4:4932253 Car04g02331 Car-Chr4:18777941 5.55E-43 dispersed
Car04g02331 Car-Chr4:18777941 Car07g01333 Car-Chr7:8393855 5.84E-47 dispersed
Car12g00120 Car-Chr12:635472 Car04g02331 Car-Chr4:18777941 6.47E-11 dispersed
Car15g00581 Car-Chr15:3215042 Car04g02331 Car-Chr4:18777941 2.62E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02331 Car_Chr04 FPKM 7.756477 6.21335 0.0 0.176604 0.564182 0.224917 0.269165 0.295993 0.0 0.0