Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02336 ATGCCTCGTCGTAGGGACGACGATGAGGATGACGATATTGATGCTGATGATGAAGAGTATGAGGATGAGATGGAGCAGCCTTTGGATGACGAGGAGGAAGAGGAAAATCGCTCGAGTAAGAAGCGGAGGAGATCGAATTTTATAGACGATGTTGCTGAGGAGGATGAGGATGAGGAGGAAGAAGAGGAGGATGATGAGGATTTTGGTGGCGGTGCTAGGCGGCGGCGTGCTAAGAGGCCTAGTGGTTCTCAGTTTTTGGATATTGAGGCGGAGGTCGATAGCGAGGATGATGAAGAGGAGGACGATGGAGAGGACGACTTCATAGTTGATGGTGCAACTGATATACCCGATGAAGATGAAAATAGAAGGATGCATCGCCGCCCATTGCTACCCCGAGAGGATGAACAGGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCTAGATATGCAAGGTCAAATCATATGGAATATGACGAGGAGACAACTGAAGTGGAGCAGCAAGCTCTTCTACCTTCTGTAAGGGATCCAAAGTTGTGGATGGTTAAATGCGCGATTGGCCATGAGAGAGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGAGGGCCTGAAATGCAAATAAGATCTGCAATTGCTCTTGATCATTTGAAGAACTTTATATATATTGAAGCGGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATATATTCACAAAAAGTAATGCTTGTTCCAATTAAAGAGATGACTGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCCAGAGATACGTGGGTCAGGATGAAGATTGGGACATACAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTTATTCCTCGGATAGACCTACAGGCTCTTGCAAACAAATTGGAAGGTAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCCCGTTTTATGAATATTGATGAAGCTAGAGAGTTGCATATCCGTGTAGAGCGCAGACGCGATCCCATTACTGGAGAATACTTTGAGAACATAGGTGGCATGTTTTTCAAAGATGGTTTCTTGTACAAAACAGTGTCCATGAAGTCAATAAGTGCCCAAAACATAAAACCAACTTTTGATGAACTTGAGAAATTTCGAAAGCCTGGGGAAAATGGTGATGGGGATATTGCTAGTTTGTCTACCTTGTTTGCAAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTCAAGGGGGATCTCAAGAATCTGAAAGGATGGGTAGAGAAAGTAGAGGAAGAGAATGTCCACATCAGACCAGAAATGAAAGGCCTTCCTAAAACTCTTGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGGAATCATGTAAAAGTTGTAACGGGGACTCAGGAGGGGGCTACTGGTATGGTTGTGAAGGTGGAGCAGCATGTGCTTATTATACTGTCTGATACAACCAAGGAACACATCCGGGTATTTGCTGATGATGTTGTTGAGAGCTCTGAGGTAACGACTGGTGTGACGAAAATTGGGGATTATGAACTTCATGATCTTGTGTTATTGGATAATATGAGCTTTGGCGTGATTATACGTGTAGAAAGTGAGGCTTTTCAGGTTCTTAAGGGTATTCCAGATAGACCTGAGGTTGATATCGTTAAGTTGAGGGAAATAAAAAGTAAGATTGACAAGAAAATCAGTGTTCAAGATCGACACAATAACACAATTTCTGCCAAAGACATTGTCAGGATTCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCAGTGGAGCACATATACAGAGGTGTGCTGTTCATTTATGATCGCCATCACTTGGAACATGCTGGCTTTATATGTGTTAAATCACATTCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAATGGTAATTCGTACTCTAGGCTTGCTGGCCTTGGGGCTCCACCTCGTTTTCCTCAGTCGCCTAAGAGATTTTCCAGAGGAGGTCCCCCGAATGATTCTGGTGGAAGACATAGAGGTGGAAGAGGGCATCATGATGGTTTGGTTGGATCAACAGTGAAAGTTCGGCAGGGTCCTTACAAGGGTTACCGTGGGCGTGTTGTTGAAATAAAAGGCCAACTGGTTCGAGTAGAGCTTGAGTCTCAAATGAAAGTTGTCACAGGCATTGGAATATTTTCCATTAACACCATAATACTTGTTTTATTTGCAGTTGACCGCAATTTTATCTCAGATAATGTGGCTGTTTCAACCCCCTATCGTGATACATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGAACTCCTCTGCATCCGTACATGACCCCAATGAGAGATATGGGAACAACGCCAAGTCATGATGGCATGAGGACACCAATGCGAAATCGAGCATGGAATCCATATGCACCCATGAGTCCGTCAAGGTAA 2505 43.79 MPRRRDDDEDDDIDADDEEYEDEMEQPLDDEEEEENRSSKKRRRSNFIDDVAEEDEDEEEEEEDDEDFGGGARRRRAKRPSGSQFLDIEAEVDSEDDEEEDDGEDDFIVDGATDIPDEDENRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCAIGHEREAAVCLMQKCIDRGPEMQIRSAIALDHLKNFIYIEADKEAHVREACKGLRNIYSQKVMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVTGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKISVQDRHNNTISAKDIVRILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICVKSHSCVVVGGSRTNGNRNGNSYSRLAGLGAPPRFPQSPKRFSRGGPPNDSGGRHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTGIGIFSINTIILVLFAVDRNFISDNVAVSTPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDMGTTPSHDGMRTPMRNRAWNPYAPMSPSR 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18808583 18815158 + Carg15770-RA Car04g02336 147761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02336 834 MobiDBLite consensus disorder prediction 656 707 - -
Car04g02336 834 Pfam KOW motif 705 735 IPR005824 -
Car04g02336 834 Pfam KOW motif 474 501 IPR005824 -
Car04g02336 834 MobiDBLite consensus disorder prediction 115 140 - -
Car04g02336 834 MobiDBLite consensus disorder prediction 51 67 - -
Car04g02336 834 Pfam Spt5 transcription elongation factor, acidic N-terminal 85 172 IPR022581 -
Car04g02336 834 MobiDBLite consensus disorder prediction 33 50 - -
Car04g02336 834 MobiDBLite consensus disorder prediction 9 32 - -
Car04g02336 834 MobiDBLite consensus disorder prediction 89 114 - -
Car04g02336 834 Pfam Early transcription elongation factor of RNA pol II, NGN section 178 259 IPR005100 -
Car04g02336 834 MobiDBLite consensus disorder prediction 809 834 - -
Car04g02336 834 Coils Coil 132 152 - -
Car04g02336 834 MobiDBLite consensus disorder prediction 1 140 - -
Car04g02336 834 ProSitePatterns Ribosomal protein L24 signature. 423 440 IPR005825 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02336 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1394.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02336 Car15g00576 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02336 Car-Chr4:18808583 Car15g00461 Car-Chr15:2452641 5.32E-22 dispersed
Car15g00576 Car-Chr15:3179698 Car04g02336 Car-Chr4:18808583 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02336 Car_Chr04 FPKM 12.05036 13.159472 11.924644 10.620612 16.101141 15.633201 16.025976 6.812872 6.411305 5.961586