Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02347 ATGGAAACCAGACTCTCCGCCGCTCTTGGCCTTCCGCCGCCGGATCCGGTTTGTTATCCTTCTCTTTTCGAATTCCCCACTCTTTTCTCCAACTTTGATTCATTACTCGCCGGTAATAAAGTCCCCAAGGATCGGAATCACTTCCAGTGTCCTCTTCCGTTTTCTTCATTGTCCTTATCCACCGAACAGCAGGTTTTCACCCCCAAATCCTCTAACTGGCTGAAACCTCCCTCTAAAAACTCCCCCAAAATTCAATCCCTTATCAAGAACTTATCCGTTCTCGAACGGGCAGTCGTCGGCGCCGGGGGTGGTGCCATGGCTGGTGCCTTCACTTATGTTTGTCTACTTCCGCTCGATACCATCAAAACCAGGCTGCAGGCAAAAGGGGCTTCGGAGATTTACAAGGGTACACTCGATGCCATTGTTAAGACCTTCCAATCCAGAGGGATTCTAGGGTTTTACAGGGGCGTTTCTGCTGTAATTGTTGGCTCTGCAGCTTCTTCAGCCGTTTATTTTGGAACATGCGAGTTTGGTAAGTCGATTCTGTCGAAATTTGATTGCCCTTCTTTGCTTATTCCTCCAACTGCTGGGGCTATGGGGAATATTATCTCCTCGGCTATAATGGTGCCGAAGGAGTTAATTACTCAGAGAATGCAGGTTGGGGTTAAAGGGAGGTCTTGGGAGGTTTTGATTCAGATTCTTGAGAAAGATGGTATAATGGGGCTTTATGCTGGTTATTTTGCAACGTTGTTAAGGAATTTACCTGCTGGGGTTTTGAGTTACTCTTCATTTGAATATTTGAAAGCTGCTGTTCTTAGCAAAACGAAGAGTAACAATCTTGAACCGCTTCAGAGTGTTTGTTGTGGAGCATTGGCCGGTGCTATATCGGCCACTCTTACAACACCTCTTGATGTTGTCAAGACAAGGTTGATGACTCAAGTTCATGGGGAGGCTGCAAATATGTACAGTGGGGTGTCGGCTACGATCAAGCAAATATTGCAGGAAGAGGGGTGGATTGGATTAACCCGTGGAATGGGTCCTAGAGTTCTTCACAGTGCTTGCTTTGCAGCTATCGATATGAACTTTCGAAGCCCTTCAGAAGAGTTGAGACCACTAAGAAAACTTCGAATCGACTTCTCGAAGGCAGCTGCGTGA 1155 46.67 METRLSAALGLPPPDPVCYPSLFEFPTLFSNFDSLLAGNKVPKDRNHFQCPLPFSSLSLSTEQQVFTPKSSNWLKPPSKNSPKIQSLIKNLSVLERAVVGAGGGAMAGAFTYVCLLPLDTIKTRLQAKGASEIYKGTLDAIVKTFQSRGILGFYRGVSAVIVGSAASSAVYFGTCEFGKSILSKFDCPSLLIPPTAGAMGNIISSAIMVPKELITQRMQVGVKGRSWEVLIQILEKDGIMGLYAGYFATLLRNLPAGVLSYSSFEYLKAAVLSKTKSNNLEPLQSVCCGALAGAISATLTTPLDVVKTRLMTQVHGEAANMYSGVSATIKQILQEEGWIGLTRGMGPRVLHSACFAAIDMNFRSPSEELRPLRKLRIDFSKAAA 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18856135 18858627 - Carg15781-RA Car04g02347 147772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02347 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 188 270 IPR018108 -
Car04g02347 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 95 181 IPR018108 -
Car04g02347 384 Pfam Mitochondrial carrier protein 195 272 IPR018108 -
Car04g02347 384 Pfam Mitochondrial carrier protein 103 184 IPR018108 -
Car04g02347 384 Pfam Mitochondrial carrier protein 280 359 IPR018108 -
Car04g02347 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 280 369 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02347 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csv:116404632 622.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01217 Car-Chr2:8256739 Car04g02347 Car-Chr4:18856135 8.07E-07 dispersed
Car04g02347 Car-Chr4:18856135 Car20g00286 Car-Chr20:1658473 9.97E-11 dispersed
Car04g02347 Car-Chr4:18856135 Car15g00536 Car-Chr15:2919035 5.17E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02347 Car_Chr04 FPKM 0.0 0.0 8.799566 7.308997 164.186478 193.750031 156.615372 0.587942 0.361848 0.095448