Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02348 GATGAATCTTCCTTGATCTGGATTTCAAGTAAAGGCGAAAGAAGTTTGAAGTTAGCTTCAATCTCACAAATTGTTCCTGGACAAAGAACTGCTGTCTTTGAAAGATATCTTCGTCCTGAAAAGGATTACTTATCATTCTCCCTTATATACAACAACGGGAAGCGATCCCTTGATCTGATTTGTAAGGATAAAGTTGAGGCAGAGGCTTGGATTGCAGGCCTTAAAGCTTTAATAGCATCTGGTCAAGGTGGACGTTCCAAGATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGATGACAGTTGTGAATTGACTTCAAATAGCCCAAGTGACAGTTCATACAGTGTGAATAGAGATAATAGCTCTCCAGAAGTTTTTGTTAGTCTCAACGAAAATAAATCTCTGAAGACTTCTAGGCCTGAAAATTACATTGCAAACTCTGAAAGGGCTCATGTATCATTAAACCAAACAAGCATGCAAGTGAAGGGGTCTAGTTCTGATGTTATGCGTGTTAGTGTTTCAAGTGCTCCCAGCACCTCTAGTCATGGGTCTGCACCAGATGACTGTGATGCTCTAGGTGATGTATACATATGGGGTGAGATTGTTGGTGACAATGTTGTGAAGATTGGGGCTGAGAAAAATAGTAGTTATGTGACCTTGAGGACAGATGTACTTCTGCCAAGACCTTTGGAGTCTAACGTTGTTCTAGACATACATCATATAGCCTGTGGGGTCAGGCATGCTGCTTTGGTGACAAGGCAAGGGGAAGTTTTTACTTGGGGAGAGGAATCTGGAGGCCGCCTTGGCCATGGTGTAGTGAAGGATGTAAGTCAACCTCGTATGATTGAATCTTTGGCAGCTAGTAGTATTGATTTTGTTGCGTGTGGAGAGTTCCACACATGTGCTGTTACAATGACCGGGGAACTTTATACATGGGGTGATGGTACCCATAATGCGGGGCTTCTTGGTCATGGCAGTGATGTCAGCCATTGGATACCAAAGAGAGTCTCTGGTCCACTTGAAGGACTTCAAGTTGCTTCAGTGACATGTGGTCCATGGCATACAGCTTTGGTAACATCGATGGGTCAGCTTTTCACATTTGGTGATGGAACATTTGGTGCACTGGGCCATGGAGACCGAGAAAATATTTCATATCCAAAGGAAGTGGAATCCTTATCAGGCCTGCGGACAATTGCCGTTGCATGTGGGGTGTGGCATACTTCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTGCGAGCATTTCATCTGGCAAACTGTTCACGTGGGGTGATGGAGATAAAAATCGTCTGGGGCATGGAGATAAGGAACCCAGGCTCAAACCCACATGTGTGCCAGCACTAATTGATTATGATTTTCACAAAATTGCTTGTGGTCACAGCCTTACTGTTGGTTTGACCACTTCAGGACAAGTTTTCTCAATGGGAAGTACTGTTTATGGCCAACTTGGGAATCCCAGTGCAGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCCGTTGAAGAAGTTTCATGCGGTGCATATCATGTGGTGGTATTAACATCAAAAAATGAAGTTTATACATGGGGAAAGGGCGCAAATGGCAGATTGGGCCATGGTGATGTTGAAGATCGGAAGACACCAACTTTGGTAGAAGCTTTGAAGGATAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCATCACAAATGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTACTTGCAGACAGGCATTTGGGTTTACACGGAAGAGACACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGAGCAGCACTTGCACCCAATCCCAGTAAACCATATCGTGTATGTGATTCATGCTATGCAAAACTGATCAAGACATCAGAAGCTAGTAATAATAATAATAGGAAAAATGCTATGCCTCGCCTCTCAGGTGAGAACAAAGATAGGATTGACAAGAGTGATATGAGAATATCTAAGTCTGTGCCTTCCAATATGGATTTGATAAAGCAATTAGACAACAAAGCTGCTAAACAAGGAAAGAAGGCTGATACATTCTCCCTTGTTCGATCCTCTCAAGCACCTTCACTATTGCAGCTTAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGAACAGCTCCTAAACCTGTCCTTACTGCTTCGGGAGTGAGTTCCAGATCTGTGTCACCTTTCTCAAGGAAACCAAGCCCTCCTCGATCTGCTACGCCTGTTCCTACAGCGTCAGGACTTTCCTTTTCCAAAAGTATTACTGATGGTTTGAAGAAAACAAATGATCTTTTGAATCATGAAGTGCTTAAACTACGTTCACAGGTTGAGAGCCTGAGGCAGAGATGTGAACTCCAGGAAATGCAGCTTCAGAAATCTATGAAGAAAACACGAGAAGCTATGGCAGTGGCTGCAGAGGAATCTGGTAAATCTAAAGCGGCCAAAGAAGTCATCAAGTTACTTACCGCCCAGCTTAAAGATATGGCTGAAAGGTTACCTCCTGGAGTATATGATGCTGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAACGGCGTCAACCATTTGAATATGAATGGAGAGCGTCATTCACGATCTGATTCACTTAGCAGCTACTCCTGTGCATCACCCACGGCATCTGATGCTGCTGCTTGGCAAGGAAGCTATGGCGCAGCTCATTCATCCAGGGAGCTTTCTGGAACGAATGAAAGTATTCCGCAACAAGATAGAATTGACAGTCGAGATTCTAGACTGCCAAATAGTGGAAGAGCTCTGCCAGTAAGCAGTAGTGCCTCGGTGACAGCTGTTGGCAAGGAGCCCGAGTCTTTACAAGATGGTGAAAATAATAATAGAGCCAAAACTTCTGTATTGGCTAATGCTACTCAAGTTGAAGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTACGGGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGGCAGAGAACCGTGAGAAGGTATACGAGAGATATAACGTTCGGAACTCCGACAAGTCTTCAGTTTCGGGACTGACTTCACAGAGGGCGGATGATGCAATTTCAATAGCTTCCCAGCAACTTTAG 3234 43.75 DESSLIWISSKGERSLKLASISQIVPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEAWIAGLKALIASGQGGRSKIDGWSDGGLYLDDSCELTSNSPSDSSYSVNRDNSSPEVFVSLNENKSLKTSRPENYIANSERAHVSLNQTSMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNVVKIGAEKNSSYVTLRTDVLLPRPLESNVVLDIHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVVKDVSQPRMIESLAASSIDFVACGEFHTCAVTMTGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVASVTCGPWHTALVTSMGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRTIAVACGVWHTSAVVEVIVTQSSASISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKIACGHSLTVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSCGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICHHKWVSSAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPSKPYRVCDSCYAKLIKTSEASNNNNRKNAMPRLSGENKDRIDKSDMRISKSVPSNMDLIKQLDNKAAKQGKKADTFSLVRSSQAPSLLQLRDVVLSTAVDLRRTAPKPVLTASGVSSRSVSPFSRKPSPPRSATPVPTASGLSFSKSITDGLKKTNDLLNHEVLKLRSQVESLRQRCELQEMQLQKSMKKTREAMAVAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGVNHLNMNGERHSRSDSLSSYSCASPTASDAAAWQGSYGAAHSSRELSGTNESIPQQDRIDSRDSRLPNSGRALPVSSSASVTAVGKEPESLQDGENNNRAKTSVLANATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWAENREKVYERYNVRNSDKSSVSGLTSQRADDAISIASQQL 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18865849 18871265 + Carg15782-RA Car04g02348 147773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02348 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 362 413 IPR000408 -
Car04g02348 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 241 251 IPR000408 -
Car04g02348 1077 MobiDBLite consensus disorder prediction 158 185 - -
Car04g02348 1077 ProSiteProfiles BRX domain profile. 994 1049 IPR013591 -
Car04g02348 1077 Pfam Transcription factor BRX N-terminal domain 832 867 IPR027988 -
Car04g02348 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 255 306 IPR000408 -
Car04g02348 1077 ProSiteProfiles PH domain profile. 1 79 IPR001849 -
Car04g02348 1077 Pfam Transcription factor regulating root and shoot growth via Pin3 993 1048 IPR013591 -
Car04g02348 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 530 577 IPR000408 -
Car04g02348 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 307 357 IPR000408 -
Car04g02348 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 362 410 IPR000408 -
Car04g02348 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 255 303 IPR000408 -
Car04g02348 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 476 525 IPR000408 -
Car04g02348 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 424 471 IPR000408 -
Car04g02348 1077 MobiDBLite consensus disorder prediction 664 679 - -
Car04g02348 1077 Coils Coil 837 857 - -
Car04g02348 1077 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 585 647 IPR017455 -
Car04g02348 1077 MobiDBLite consensus disorder prediction 951 966 - -
Car04g02348 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 348 358 IPR000408 -
Car04g02348 1077 MobiDBLite consensus disorder prediction 922 936 - -
Car04g02348 1077 MobiDBLite consensus disorder prediction 742 759 - -
Car04g02348 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 477 528 IPR000408 -
Car04g02348 1077 MobiDBLite consensus disorder prediction 876 902 - -
Car04g02348 1077 Pfam Pleckstrin homology domain 14 78 IPR001849 -
Car04g02348 1077 MobiDBLite consensus disorder prediction 922 980 - -
Car04g02348 1077 MobiDBLite consensus disorder prediction 742 773 - -
Car04g02348 1077 MobiDBLite consensus disorder prediction 158 186 - -
Car04g02348 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Car04g02348 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 361 IPR000408 -
Car04g02348 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 529 580 IPR000408 -
Car04g02348 1077 Pfam FYVE zinc finger 581 646 IPR000306 GO:0046872
Car04g02348 1077 MobiDBLite consensus disorder prediction 654 685 - -
Car04g02348 1077 Coils Coil 788 822 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02348 - - - csv:116404564 1970.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00880 Car04g02348 CCT
Car04g02348 Car09g00994 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02348 Car-Chr4:18865849 Car14g00989 Car-Chr14:7475050 0 dispersed
Car15g00197 Car-Chr15:1079310 Car04g02348 Car-Chr4:18865849 2.40E-28 dispersed
Car17g00659 Car-Chr17:6112874 Car04g02348 Car-Chr4:18865849 8.03E-17 dispersed
Car04g02712 Car-Chr4:20982609 Car04g02348 Car-Chr4:18865849 5.84E-06 transposed
Car01g00880 Car-Chr1:8064384 Car04g02348 Car-Chr4:18865849 0 wgd
Car15g00562 Car-Chr15:3119510 Car04g02348 Car-Chr4:18865849 0 wgd
Car04g02348 Car-Chr4:18865849 Car09g00994 Car-Chr9:6453846 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02348 Car_Chr04 FPKM 28.387434 26.893988 31.1908 31.894964 26.563663 19.855396 27.485199 128.040085 130.617981 140.466461