Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02355 ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATTAGGTTGAGTCTTGACGAGCGCATTTACGTCAAGCTTCGCTCTGACCGCGAACTCCGTGGGAAGCTCCATGCTTATGATCAGCATCTAAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACAGTTGAAATTGATGATGAGACTTATGAAGAGATAGTTCGGACATCCAGGCGTACGGTCCCGTTTCTTTTCGTTAGAGGAGATGGTGTCATATTGGTTTCTCCTCCGCTGAGGACTGTTTAA 294 45.92 MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18936354 18937805 - Carg15789-RA Car04g02355 147780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02355 97 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 1 97 - -
Car04g02355 97 SUPERFAMILY Sm-like ribonucleoproteins 11 93 IPR010920 -
Car04g02355 97 SMART Sm3 14 92 IPR001163 -
Car04g02355 97 CDD LSm3 11 92 IPR034105 GO:0000398|GO:0003723
Car04g02355 97 Pfam LSM domain 16 92 IPR001163 -
Car04g02355 97 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 1 97 IPR040002 GO:0003723
Car04g02355 97 Gene3D - 2 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02355 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 - csv:101203558 186.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00699 Car-Chr4:4057774 Car04g02355 Car-Chr4:18936354 3.49E-08 dispersed
Car04g02355 Car-Chr4:18936354 Car03g01331 Car-Chr3:10081574 2.79E-07 dispersed
Car15g00554 Car-Chr15:3058309 Car04g02355 Car-Chr4:18936354 2.45E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1383 Blo01g01725 Blo12g00790 . Bda03g00388 Bpe02g00216 Bpe04g00348 Bma04g00365 Bma01g02504 Cmo04g02562 Cmo15g00605 . . . . Sed11g1350 . . Bhi04g01779 Tan11g1142 Cmetu07g0819 . Hepe02g2793 . Lcy10g1350 Cla08g00709 Cam08g1136 Cec08g0725 Cco08g0833 Clacu08g0844 . Cre08g0645 . . Cone17ag0788 Cone20ag0382 . . . Cme03g00319 . . Bda11g00877 . . . . . . . . . . Car04g02355 . Cpe01g02115 . . . . . . . . . . . . . . . Lsi08g00553 . Chy03g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004280 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 4 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02355 Car_Chr04 FPKM 7.956682 8.620549 24.899481 25.022081 15.601974 12.234091 17.168682 26.2862 26.143492 24.908085