Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02356 ATGTCTTTGGTAGATTATAGCAAGGGAGAGAGGTGTAAAAACTCACAGAGTGACGATGAGCCAAGCTTTAACGAGGACGGTATCGATGCTCATAATGAGACGATTAAGGGGAAGAAGGGATCGATGTGGCATCGTGTGAAATGGACGGATAAAATGGTGAAGCTTCTGATTACGGCGGTGTCTTATATCGGAGATGATATTGCTTCGGATTATGAAGGAGGTGGAAGAAGGAAATTTCAAATTATACAGAAGAAAGGTAAATGGAAATTGATGTCAAAGGTTATGGCTGAAAGGGGCTATCAAGTTTCACCACAGCAGTGTGAGGATAAATTTAATGACCTCAATAAGAGGTATAAGAGGCTGAATGATATGATTGGGAGAGGCACTACGTGCCAAGTTGTTGAGAATCCTGCACTTCTTGATGTCATTGATTATTTAACAGACAAAGAGAAGGATGATGTGAGAAAAATTTTGAACTCGAAGCAATTGTTCTATGAGGAAATGTGTTCGTATCATAATTCGAATCGACTCCATCTACCCCATGATCCTGCTTTGCAGCGTTCTTTGCAGTTGGCTTGTAGAGTTAGGGATGATCATGATTATGATGAGCCAAGGAGACACCAAAACGATGATTTTGATGAAAACGAACATGGTGAAACTGATGAACACGATGATTTTGAGGAGAATTTTGCACCTCATGGGGACGACACACTATCTCTAGGAGGCTCAGTAAAGAGGCTAAAGCGAGGTCAGGACTTCGACGATGCTCATGCTTGTGGAAATTCCTCGAATTCTCTTGATTGCAATAGAGGTTCTCATGCTTACTCACAAACACGATTCGCTCAAGGTGATATATCTCATTTAGAAACTGAAAGTATGAAAGGTTCTTTGTCGCAAAAGCAGTGGATGGAGCTTCGTTTACTTCAGTTGGAAGATCAGAAGCTTCAAACTCGAGTTGAAATGTTGGAATTGGAGAAACAGAAGTTCAAATGGGAGAGAGTTAACAAGAAAAAGGACCGTGAGCTTGAAAAAATGAGGATGATAAACGAGAGGATGAAGCTTGAAAACGAGCGCGTTGCACTTGACATAAAGCAGAAGGAAATCGAGTTAGACACTGAGCTGTGTGCTAGTGAGGACATAGGCCTCAAGGAGGGGTGGATTATGCGTTATAAAATCGTGAGGCTGACAGCGATACGTAACGGGTCAAAACGGGTAATATCTGTTAGTGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCTTGACACCGAGCGGTGTACTAGCGAGGATGCGGGGCCCTTAAGGGGGAGCCAGACACTGAGCGGTGTGTCAGCGATGACGCTGGGCCCTCAAAGGGGGTGGATTGTGAGATCTCACTCAGATATTGGAAACTTCTCTCTGCATTATGCTTATGGCTCATCTCTGATACTGAGGCTGTTTTTCCCTCTTGTTTATACTGATACTACTAACACATTTCCTGATCAGCCACTGTCACTTCTAGCATCCATGCACAGAAATCTTGACAATCTGCAATCCTGA 1539 43.21 MSLVDYSKGERCKNSQSDDEPSFNEDGIDAHNETIKGKKGSMWHRVKWTDKMVKLLITAVSYIGDDIASDYEGGGRRKFQIIQKKGKWKLMSKVMAERGYQVSPQQCEDKFNDLNKRYKRLNDMIGRGTTCQVVENPALLDVIDYLTDKEKDDVRKILNSKQLFYEEMCSYHNSNRLHLPHDPALQRSLQLACRVRDDHDYDEPRRHQNDDFDENEHGETDEHDDFEENFAPHGDDTLSLGGSVKRLKRGQDFDDAHACGNSSNSLDCNRGSHAYSQTRFAQGDISHLETESMKGSLSQKQWMELRLLQLEDQKLQTRVEMLELEKQKFKWERVNKKKDRELEKMRMINERMKLENERVALDIKQKEIELDTELCASEDIGLKEGWIMRYKIVRLTAIRNGSKRVISVSGGLGLLQMVSELDTERCTSEDAGPLRGSQTLSGVSAMTLGPQRGWIVRSHSDIGNFSLHYAYGSSLILRLFFPLVYTDTTNTFPDQPLSLLASMHRNLDNLQS 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18939607 18941978 + Carg15790-RA Car04g02356 147781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02356 512 Coils Coil 335 369 - -
Car04g02356 512 Pfam Myb/SANT-like DNA-binding domain 45 171 IPR044822 -
Car04g02356 512 MobiDBLite consensus disorder prediction 200 214 - -
Car04g02356 512 MobiDBLite consensus disorder prediction 1 31 - -
Car04g02356 512 MobiDBLite consensus disorder prediction 11 31 - -
Car04g02356 512 MobiDBLite consensus disorder prediction 200 242 - -
Car04g02356 512 Coils Coil 305 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02356 - - - csv:105435760 652.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02356 Car15g00553 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01031 Car-Chr2:7207820 Car04g02356 Car-Chr4:18939607 3.92E-69 dispersed
Car04g02356 Car-Chr4:18939607 Car06g00372 Car-Chr6:2050138 2.43E-51 dispersed
Car09g01051 Car-Chr9:8885321 Car04g02356 Car-Chr4:18939607 3.23E-09 transposed
Car15g00553 Car-Chr15:3054616 Car04g02356 Car-Chr4:18939607 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1382 . Blo12g00789 . Bda03g00389 . Bpe04g00349 Bma04g00366 . Cmo04g02563 Cmo15g00604 . . . . Sed11g1351 . Cpe13g00682 Bhi04g01778 Tan11g1141 Cmetu03g2202 . Hepe02g2794 . Lcy10g1351 Cla08g00710 Cam08g1138 Cec08g0727 Cco08g0835 Clacu08g0846 . Cre08g0647 Cone4ag1503 . Cone17ag0787 Cone20ag0381 . . . Cme03g00318 . . . . . . . . . . . . . Car04g02356 Car15g00553 Cpe01g02116 . . . . . . . . . . . . . . . . . Chy03g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003875 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 3 1 3 1 1 2 2 0 2 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3451 PF13837 Myb_DNA-bind_4 7.10E-22 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02356 Car_Chr04 FPKM 23.326872 22.652685 19.110636 21.257786 8.699095 11.807893 11.148507 25.646599 25.123882 24.424091