Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02357 ATGAGGAGCTTGGTTAGCTATGCAGAAGCAATGGATGTCCACAAGCCATACATTGCTATGCTGTTCGTTCAGTGTGTGTACTCAGGAATGGCTTTGTTCTCAAAGGCAGCCATTTCTCAAGGCATGAACCCACCCATCTTCGTCTTCTACCGCCAAGCGTTCGCTACCATCGCCATGGCTCCGTTCGCCTTCTTCTTCGAAAGGAAGAAGGCTGTTCCTTTATCCTTCAAGTTTCTCTTCAAAGTGTTCTTGATTTCTCTAAGTGGAATCACCTTGAGTTTAAACCTTTATTACATAGCTATCAACCATATATCAGCAACATTCGCAGCCGCTACAACCAACACGATCCCCGCTATTACACTCCTCTTCGCTCTCCTCTTCAGATATGAAGTGATCTCCGTGAGAAAAATGGAAGGGATAGCGAAATTGGTTGGGGGTGTGATAGGTTTTTCTGGGGCTTTGGTGTATGCTTTTGTGAAGGGTCCAGTGATGAAGTTCATGAATTGGTACCCACAAAACGCTCGTAATTCGTTCGAAGGGTACTCGGGTTCGGAATGGATTAAGGGTTCATTTGTGATGCTTTCAGCCAATATTGCTTGGTCTTTGTGGCTTGTTTTGCAGGCCTCAATTGTGAAGGAATATCCAGCAAAGTTGAGGATTACAAGCTTGCAGTGCTTCTTCAGCTTGATACAATCAGGTTTGTGGGCTGTGGTGATGGAGAGAAAGGCTGATGCTTGGAAGCTTGGATGGAATCTTCAACTCTTCTCGGTTGCCTATTGCGGTGTGATCGTGACGGGAATGACGTATTGGCTACAAATATGGACAGTAGAGAAGAAAGGACCAGTGTTCACAGCCATGTTTACACCATTAGCACTAATCATAACAGCAATCTTCTCAGCATTAGTATGGAAGGAAGCCCTTCATTGGGGAAGTGTTGGTGGTGCTATATTGCTGGTGGTGGGGCTTTATTGTGTTCTATGGGGGAAGAACAAAGAAGAAGATATCAAAAGTGAAGCAATTGAACAAAGAGTTGATATCAAAGAGGAAACCAATTCAGCCTCCATTTGCTAA 1071 44.44 MRSLVSYAEAMDVHKPYIAMLFVQCVYSGMALFSKAAISQGMNPPIFVFYRQAFATIAMAPFAFFFERKKAVPLSFKFLFKVFLISLSGITLSLNLYYIAINHISATFAAATTNTIPAITLLFALLFRYEVISVRKMEGIAKLVGGVIGFSGALVYAFVKGPVMKFMNWYPQNARNSFEGYSGSEWIKGSFVMLSANIAWSLWLVLQASIVKEYPAKLRITSLQCFFSLIQSGLWAVVMERKADAWKLGWNLQLFSVAYCGVIVTGMTYWLQIWTVEKKGPVFTAMFTPLALIITAIFSALVWKEALHWGSVGGAILLVVGLYCVLWGKNKEEDIKSEAIEQRVDIKEETNSASIC 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18947473 18949840 + Carg15791-RA Car04g02357 147782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02357 356 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Car04g02357 356 Pfam EamA-like transporter family 15 149 IPR000620 GO:0016020|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02357 - - - cmos:111463975 696.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00965 Car-Chr3:7481299 Car04g02357 Car-Chr4:18947473 2.19E-84 dispersed
Car04g02357 Car-Chr4:18947473 Car20g00895 Car-Chr20:9476414 1.81E-89 dispersed
Car07g00768 Car-Chr7:4005272 Car04g02357 Car-Chr4:18947473 1.23E-11 dispersed
Car12g00739 Car-Chr12:7149160 Car04g02357 Car-Chr4:18947473 9.57E-72 dispersed
Car16g00007 Car-Chr16:171360 Car04g02357 Car-Chr4:18947473 4.67E-65 dispersed
Car18g01261 Car-Chr18:11932489 Car04g02357 Car-Chr4:18947473 1.39E-61 dispersed
Car04g02357 Car-Chr4:18947473 Car20g00937 Car-Chr20:10238436 1.36E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02357 Car_Chr04 FPKM 7.972639 8.495915 2.757176 2.768084 22.953106 23.244019 23.527637 1.712106 2.16246 2.011519