Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02358 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCTCGACGCAGTTTTGAACTCAGGCTGTCTAGCCATTCCAGAGGTAAATCTCATGGACCAGTTCATGAGTTTGATGATGAACCTCTGCTAATCCAAACTAGCCGCTGGGCTAGCCTTCCGCCCGAGTTATTATTGGATGTGGTTCGGAGACTAGAGGCAAGCGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACGTGTGCAAAGAAATCGTCAAAAGTCCCGAGTTCTCCGGGAAAATTACATTCCCCATCGCCTTGAAGCAGCCCGGACCTCGTGATGGTACTATTCAATGCTTCATCAAGAGGAACAAGTCTAATTTAACCTATCATCTTTATCTTTGCCTTAGTCCTACTTTACTTGTTGAGAACGGGAAATTTCTTCTTTCTGCAAGAAGAACGAGGAGAACTACTTCGACCGAGTATGTTATATCATTGGCTGCAGACGATATATCGAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACAAAGTTCATTATATATGATACACAGATTCCTTACAACGGCAACCAAATTCCGACCCTTGGCCGAAGCCGGAGATTCTACTCCAAAAAGGTCTCTCCGAAGGTACCGGTGGGTAGCTACAGCATAGCACAAATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGCACTGCACTATGTACTCGATCCCGACTTCATCTCTTGAGCCAGATTCCTCCGTTCCAGGACAGCCGGAACTCAATCCTCGCCCCCTCGAAGACTCATTTCGAAGCATTTCATTCTCCAAGTCGATCGATCATTCAACTGAGTTCAGCAGTTCTCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATGGCGAGAGAAAAGACATAGACATACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAACTTCCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCGCCGCAACGTCGCCTGCTGCAGAAGTGTCGGTACCGTCACAGCCACCTCCCCAGCCCGCCCAACCTACGCATTCCGATCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGTAAGGACATATTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCGTGTGAATAG 1305 47.66 MSFRSILRDVRDGFGSLSRRSFELRLSSHSRGKSHGPVHEFDDEPLLIQTSRWASLPPELLLDVVRRLEASENTWPSRRNVVACAAVCRSWRDVCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPTLLVENGKFLLSARRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQIPYNGNQIPTLGRSRRFYSKKVSPKVPVGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPDSSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDGERKDIDIPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEVSVPSQPPPQPAQPTHSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18952185 18956505 + Carg15792-RA Car04g02358 147783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02358 434 Pfam Tub family 114 429 IPR000007 -
Car04g02358 434 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Car04g02358 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Car04g02358 434 Pfam F-box domain 53 99 IPR001810 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02358 Car15g00552 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00895 Car-Chr1:8432076 Car04g02358 Car-Chr4:18952185 0 dispersed
Car04g02358 Car-Chr4:18952185 Car16g00326 Car-Chr16:2007663 0 dispersed
Car15g00552 Car-Chr15:3044590 Car04g02358 Car-Chr4:18952185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3452 PF01167 Tub 5.10E-115 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02358 K19600 - csv:101203074 789.645