Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02375 ATGGAGGGAGCAATCGATGGATTTCTTAAACGGTGTCTATTGTACTTCATGGCTATGTGCTTAACCTTAACAATGGAGAGTTCATTAGTTGCTTCTCTATCTCCCGATGGAGAAGCGCTTCTCTCTCTCGTATCTGCTGCTGGTCCTTCTGTTCTTGCCTCTTGGAATCCATCTAGCCAAAACCCTTGTTCTTGGGAAGGAATCACTTGTTCTCCTCAGAACAGAGTCATTTCATTATCTCTTCCTAAAACGTTCTTAAACCTCTCTGTTTTTCCTCCTGAGTTGTCTTCTTTATCTTCTCTGCAACTTCTTAATCTCTCTTCCACCAATGTATCTGGCTCAATCCCTTCCTCTTTTGGCCTACTCACTCATCTTCGCCTGTTGGACCTTTCATCCAATGATCTCTATGGTCCAATTCCTCCTCAGCTTGGTTCTCTTTCTTCACTTCAATTCCTTTTCCTGAATTCCAATAGACTTTCTGGTAAGATTCCTCCGCAGCTTGCTAATCTGGCTTCTCTGCAAATTCTTTGCCTCCAAGACAATTTGTTTAATGGCTCTATACCATCACAGTTTGGATCTTTGCTGTCTCTCCAAGAGTTTCGAATCGGAGGGAATCCGTTCCTTTCGGGAGAGATTCCGTCACAGATGGGGCTGCTTACTAATCTCACTACATTCGGGGCAGCGGCTACGGCGCTTTCGGGGGCTATACCATCTACATTTGGAAACTTAATCAACCTCCAAACTTTGTCACTCTATGATACTGAGATATCTGGTTCAATACCTCCTGAGTTGGGGCTTTGTTCTGAGCTACGAGATTTGTATTTGCATATGAACAAGCTCAATGGTTATATTCCTCCTCAGCTGGGTAGGTTGCAGAAGCTTAGTAGTTTGTTTCTCTGGGGCAATGCTCTATCAGGGGTGATACCATCAGAAATTTCAAATTGTTCGGCTCTAGTTGTTTTTGATGCGTCGGAGAATGATCTTTCTGGTGAAATCCCAAGTGATTTAGGGAAGTTGGTTGTTCTTGAACAGTTTCATGTATCGGACAATTCGATCTCGGGTGCAATACCGTGGCAGCTAGGCAACTGCACAAGCTTGACTGCCCTTCAGCTTGATAATAATCAACTATCAGGTGAAATTCCACCAGAACTTGGCAATTTGAGATCCCTGCAAAGCTTTTTCTTATGGGGGAATTCTGTGTCAGGAACCATACCATCTTCCTTCGGCAACTGCACTGAGTTATATGCCTTTGATCTTTCAAGAAACAAGCTCACTGGGGTAATCCCAGAAGAAATTTTCAGCTTGAAGAAGCTGAGCAAGCTTTTGCTCCTCGGAAATTCTTTGTCTGGCGGGTTGCCTCGAAGCGTCGCAAATTGTCAATCATTAGTGAGGTTGAGGCTCGGAGAAAACCAGCTTTCAGGCCAGATTCCGAAGGAGGTAGGACGGTTGCAAAATCTCGTCTTTCTCGACTTGTATATGAATCATTTTTCGGGTGGCCTTCCGCCTGAGATCGCTAATATTACAGTTCTTGAGCTACTTGATGTGCATAATAACTATATAACTGGTGAAATTCCTCCCCAGCTTGGGGAGTTGGTGAACTTGGAGCAGCTCGATCTCAGTCGAAACAGCTTCACCGGTGAAATTCCTGAGAGCTTTGGAAACTTCAGTTATTTGAATAAACTTATTCTCAACAATAATCTACTGTCAGGGTCAATTCCAAAGTCCATCAAGAACCTGGAGAAACTAACTCTACTTGATTTGAGTTACAACAGTCTCTCTGGTACCATACCACCAGAAATTGGTTACATGAAGAGCTTGTCGATCAGTTTGGACTTTAGCTCGAACGGGCTTACCGGAGAAATTCCCGAGGCGATGTCCAGTTTGACACAGTTACAATCACTTGATCTTTCCAATAACATGCTTTATGGAAACATTAAAGTGTTGGGTCTCTTGACTAGTCTCACTTCTCTCAATATCTCCCACAACAATTTCTCAGGTCCTATGCCTGTAACGCCATTTTTTAAAACGCTACCACGAGATGCTTATGATCAGAACGTGAATCTTTGTAAATCATTCAATGGATTTACTTGTTCTTCGAGTTCGATGCGAAGAACTGGCTTAAAGTCTGTAAAAGCTGCTGCTTTGATTACCATCATTCTTGCTGCAGTTCTCATCCTAGTTTTTGCATTGTGGATAGTAGTTTCACGAAATGGCAAGTACATGGCAGAGAAACATTCCAGGACGTCGACCCCTGCTTCGGCTGCCGAGGATTTCTCTTATCCATGGACCTTCATCCCATTTCAGAAGCTCAATTTTACCATAGATAACATCTTGGAATCCATGAAAGACGAAAACATAATTGGAAAAGGTTGTTCTGGGGTTGTTTATAAAGCAGATATGCCAAATGGTGAATTAGTTGCAGTGAAGAAACTATGGAAAACGAAGCAGGACGAAGAAGCAGTTGACTCGTGTGCAGCGGAGATTCAAATTCTCGGGCATATTCGACATCGAAACATAGTGAAGCTCATTGGTTATTGCTCTAATAGAAGCGTCAAGCTACTTCTCTACAACTACATTTCCAATGGTAATCTACAACAACTCTTGCAAGGAAACAGGAATTTGGACTGGGAAACTAGGTACAAAATTGCAGTTGGGACAGCCCAGGGTCTGGCTTATCTTCATCATGATTGTGTGCCTGCAATTCTTCACAGAGATGTCAAGTGCAATAACATACTTCTAGACTCCAAATTTGAAGCTTATCTAGCAGATTTCGGCCTAGCAAAGTTGATGAACGCTCCAAATTATCACCACGCAATTTCAAGAGTAGCGGGATCATACGGTTATATAGCCCCAGAATACGGATATACCATGAACATAACCGAGAAGAGTGATGTCTATAGCTATGGAGTTGTTCTGCTAGAGATACTAAGTGGCCGTAGCGCAGTTGAGGCACGAGTTGGAGACGGTCTTCACATTGTTGAATGGGTGAAGAAAAAGATGGCAAGCTTCGAGCCTGCTATATCGATACTCGACGCAAAGCTCCAAGGCTTACCAGATCAGATGGTTCAAGAAATGCTTCAAACACTTGGTATAGCCATGTTTTGTGTGAACTCCTCTCCAGCAGAAAGGCCAACAATGAAGGAAGTGGTAGCATTATTGATGGAGGTGAAGAGTCCTCCAGAAGAATGGGGCAAAACCTCCCAACCTCTGATAAAGCAGTCCTCAAATTTAAGTTCAAATAATTGA 3246 43.01 MEGAIDGFLKRCLLYFMAMCLTLTMESSLVASLSPDGEALLSLVSAAGPSVLASWNPSSQNPCSWEGITCSPQNRVISLSLPKTFLNLSVFPPELSSLSSLQLLNLSSTNVSGSIPSSFGLLTHLRLLDLSSNDLYGPIPPQLGSLSSLQFLFLNSNRLSGKIPPQLANLASLQILCLQDNLFNGSIPSQFGSLLSLQEFRIGGNPFLSGEIPSQMGLLTNLTTFGAAATALSGAIPSTFGNLINLQTLSLYDTEISGSIPPELGLCSELRDLYLHMNKLNGYIPPQLGRLQKLSSLFLWGNALSGVIPSEISNCSALVVFDASENDLSGEIPSDLGKLVVLEQFHVSDNSISGAIPWQLGNCTSLTALQLDNNQLSGEIPPELGNLRSLQSFFLWGNSVSGTIPSSFGNCTELYAFDLSRNKLTGVIPEEIFSLKKLSKLLLLGNSLSGGLPRSVANCQSLVRLRLGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGGLPPEIANITVLELLDVHNNYITGEIPPQLGELVNLEQLDLSRNSFTGEIPESFGNFSYLNKLILNNNLLSGSIPKSIKNLEKLTLLDLSYNSLSGTIPPEIGYMKSLSISLDFSSNGLTGEIPEAMSSLTQLQSLDLSNNMLYGNIKVLGLLTSLTSLNISHNNFSGPMPVTPFFKTLPRDAYDQNVNLCKSFNGFTCSSSSMRRTGLKSVKAAALITIILAAVLILVFALWIVVSRNGKYMAEKHSRTSTPASAAEDFSYPWTFIPFQKLNFTIDNILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKLLLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNAPNYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVEARVGDGLHIVEWVKKKMASFEPAISILDAKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSNLSSNN 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19059500 19062823 + Carg15810-RA Car04g02375 147800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02375 1081 MobiDBLite consensus disorder prediction 1067 1081 - -
Car04g02375 1081 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Car04g02375 1081 Pfam Leucine rich repeat 533 592 IPR001611 GO:0005515
Car04g02375 1081 Pfam Leucine rich repeat 388 448 IPR001611 GO:0005515
Car04g02375 1081 ProSiteProfiles Protein kinase domain profile. 781 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02375 1081 MobiDBLite consensus disorder prediction 1060 1081 - -
Car04g02375 1081 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672|GO:0006468
Car04g02375 1081 ProSitePatterns Protein kinases ATP-binding region signature. 787 810 IPR017441 GO:0005524
Car04g02375 1081 Pfam Protein kinase domain 783 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02375 1081 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02375 Car-Chr4:19059500 Car17g00104 Car-Chr17:620658 0 dispersed
Car15g00531 Car-Chr15:2878251 Car04g02375 Car-Chr4:19059500 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88849 PF00069 Pkinase 4.30E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02375 - - cmax:111487174 2000.71