Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02381 ATGGCAACTCCAGTTACGGCACCGGCGGCTGTCGCTACAGTTCAAACGGCGGCGATTCCTCCGACTGACTCTGTCGCCACTGGAGGCGGATTCTTGAGTTCTTCATTGTATGTTGGCGATCTGGACCCGACTGTGGACGAGGGACAGCTTTTGGAACTGTTTAGCCAAGTGGCTCAGGTTGTCTCTATTAGGGTTTGCAGGGATCAGACAGGCAGGCAATCGCTTGGATACGCTTATGTTAATTTCAGCAATCATCAGGAAGCTTCCAGCGCCTTGGAACATTTGAATTTCAGCCCCATTAATGGGAAGCCTATCAGGATTATGATGTCGAATCGAGATCCTAGCATCCGAAAAAGTGGCCATGCAAATGTTTTCATCAAAAATCTGGACGCATCAATTGATAACAAGGCATTGCATGATACATTTGCTACCTTCGGTCCTATTCTTTCGTGTAAAGTTGCCATTGATAGCAATGGTCAATCAAAAGGGTATGGATTTGTGCAATTTGAAAATGAGATATCTGCAAACATTGCTATAGTTAGATTGAATGGCATGCTGCTCAATGATAAGCAAGTTTTTGTTGGACATTTTATTCGACGTCAGGAAAGGATTCAGGCAAATGGATCGACATTTACTAATGTTTATGTGAAGAATTTACTGGAAACTACCACAGCTGATGACCTAAAAAATCTTTTTGCTACACATGGTGCCATTACTAGTGCAGTTGTCATGACAGATTCGAAAGGGAAGTCCAAATGTTTTGGCTTTGTGAATTTCCAGAGCCCAGACTCTGCTGCTGCTGCAGTTGAAATGTTGAATGGTACCATCCTTGGTGATGAAAAGGTTCTGTATGTAGCCAGGGCTCAGAAGAAAGTAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAACGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTATATAAAAAACCTTGATGACCATATTGATGATGAGAAGCTCAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAAAATGGACTGAGCAAGGGATCTGGTTTTGTAGCATTTTCTTCGCCAGATGAAGCAACGAGAGCCTTGAATGAATTGAATGGAAAAATGAAGGGAAGGAAACCTCTGTATGTGGCTGTTGCCCAGCACAAAGAAGAGAGAAAGGCTCGGCTCCAGGCTCAATTTGCTCAAGCCAGAGCAGCTGGCGCAATATCGTCTTTGCCTTCAGGAATTCCAGGGTTTCATCCAGGTGCACCACGCCTTGCACCTCAGCAGCTGTATTATGGTCAGGGAAATCCCGGGCTGGTGCCCTCACAGCCTGCTGGATACGGCTTCCAGCCTCAACTCATGACCGGAATGCGACCTGGTATGGGTCCAAACTTCATCATGCCTTACCAATTTCAGAGGCAAGGACAGCCCGGGCCACATCCTGGGATGAGGCGAGGTGGAAATTCGCAACCATTTAATAAGCAGCAGCAGTCACTGCTCCGTGGCACTGGACAAGGTTTTAGTTACATGAACAATGTACGGAATGGATTAAAGCCACCCGTCCTGCCCCCTGTTCTGCCTCAAGCTGTTGTTGGTCCAGTGATGCCTCTGACTTTTGATACTTCTGGAGTGTCTAGCTCCCCCATTGACGTCCAACGATCAAGGGTCGTGCCTTCATCAACACTCGCTTCTGCATTAGCTTCTGCTTCACCCGAAAACCAACGTGTGATGCTCGGCGAGCAGCTGTATCCACTTGTGGAATGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGCATGTTGCTGGAAATGGACCAACCCGAGGTCCTTCATCTCATCGAGTCACCAGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCACAAAGCTTCATCGGAACCCGAGCTATCTGATCAGCTCGGTGCATTGGCCCTGGCCAAATGA 1971 46.68 MATPVTAPAAVATVQTAAIPPTDSVATGGGFLSSSLYVGDLDPTVDEGQLLELFSQVAQVVSIRVCRDQTGRQSLGYAYVNFSNHQEASSALEHLNFSPINGKPIRIMMSNRDPSIRKSGHANVFIKNLDASIDNKALHDTFATFGPILSCKVAIDSNGQSKGYGFVQFENEISANIAIVRLNGMLLNDKQVFVGHFIRRQERIQANGSTFTNVYVKNLLETTTADDLKNLFATHGAITSAVVMTDSKGKSKCFGFVNFQSPDSAAAAVEMLNGTILGDEKVLYVARAQKKVEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQNGLSKGSGFVAFSSPDEATRALNELNGKMKGRKPLYVAVAQHKEERKARLQAQFAQARAAGAISSLPSGIPGFHPGAPRLAPQQLYYGQGNPGLVPSQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQGQPGPHPGMRRGGNSQPFNKQQQSLLRGTGQGFSYMNNVRNGLKPPVLPPVLPQAVVGPVMPLTFDTSGVSSSPIDVQRSRVVPSSTLASALASASPENQRVMLGEQLYPLVECLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLHKASSEPELSDQLGALALAK 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19080168 19083494 - Carg15816-RA Car04g02381 147806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02381 656 Coils Coil 391 411 - -
Car04g02381 656 Coils Coil 285 305 - -
Car04g02381 656 Pfam Poly-adenylate binding protein, unique domain 572 636 IPR002004 GO:0003723
Car04g02381 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 564 641 IPR002004 GO:0003723
Car04g02381 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 386 IPR000504 GO:0003723
Car04g02381 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Car04g02381 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Car04g02381 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 191 IPR000504 GO:0003723
Car04g02381 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 194 IPR000504 GO:0003723
Car04g02381 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Car04g02381 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Car04g02381 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Car04g02381 656 MobiDBLite consensus disorder prediction 480 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00450 Car-Chr4:2548265 Car04g02381 Car-Chr4:19080168 0 dispersed
Car04g02381 Car-Chr4:19080168 Car19g00450 Car-Chr19:6228990 0 dispersed
Car20g00141 Car-Chr20:775359 Car04g02381 Car-Chr4:19080168 1.40E-07 dispersed
Car04g02381 Car-Chr4:19080168 Car15g00530 Car-Chr15:2873752 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02381 K13126 - csv:101219081 1047.73