Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02390 ATGCTCTTGAAGCCATTCAACACCGTCCCCGTCATCTTCATGTTTGCTCTCGCATTCTTCATCCTCCTCTTAACTGGTTTTCTTGAATTTCCATCGGCGTTCACTTCCATCGTACCGCCGACCGACGATCTGAATCTCTCAGCCGTTGAGTTTGTATCTGAACCTTTCACTGATTTGATCACCTCTTTTAATAAATGGGATTCTCAGGTCGGTTGTGATCGGTTTCGGGAGAAAATTGGCGGCGGTTTGGGTAATCGGTCTTCGTCTTGTTCGCTGCAGCTAGTCGGCGCCGATTGTAGTGGTGATTGTCACGCTCTGAAATTGGTTCATGTTGCTGTGTTGGTGAAAGGATGGACATGGATTCCGGATAATTTAGACAATTTGTATTCGTGTTCTTGCGGATTGAGTTGTCTTTGGACTAAATCTTCTGTTCTTGCTGATAAACCTGACGCCTTGTTCTTCGAGACCAGTACGCCTCCGAGACAGAGGCGCAGGGGAGATCCTCTTCGCGTATATATGGATCTCGAGGCTGGTCGGAAGCGCTCGGGTTTTGAGGATCTATTTGTTAGTTATCATGCAGAAGACGACATTCAGTCAACTTACGCAGGAGCACTCTTTCACAATGGTCGAAACTATCACGTATCTTCTTCTAAAAACAATGATACGCTCGTTTATTGGTCGTCGTCCCGCTGTCTTCCCGAAAGAAATCAGCTAGCTGAAAAGCTTCTAACTTATCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAATGTAGGCGGACTGGATATGGCCCTCTCTATGTACCCTGAATGTGCGAATGATGGCAGTGTTACCCCAAAATTGTGGGATCATTTGCATTGCGCACTGTCTCATTACAAATTTGTTCTAGCAATCGAAAACACGATGACCGAAAGTTACGTGACAGAGAAGCTATTTTACGCGCTAGACTCTGGTTCGGTTCCGATCTATTTTGGTGCCCCAAATGTTTGGGACTTTGTCCCTCCACATTCTATAATTGATGGGTCTAAATTCAGCTCGTTAGAAGAGTTAGCTTCTTATGTAAAGCGACTTGCCAATGACCCGGTAGCTTATGCCGAGTACCATGCTTGGAGACGATGCCACACGTTGGGTAACTATAGAATGACCCGTGCTGCAAGCCTCGACACGCTGCCGTGCCGAGTATGTGATGTTGTGTGCAGAAAGGGTGGTAGAAATGCTTGA 1221 46.36 MLLKPFNTVPVIFMFALAFFILLLTGFLEFPSAFTSIVPPTDDLNLSAVEFVSEPFTDLITSFNKWDSQVGCDRFREKIGGGLGNRSSSCSLQLVGADCSGDCHALKLVHVAVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRVYMDLEAGRKRSGFEDLFVSYHAEDDIQSTYAGALFHNGRNYHVSSSKNNDTLVYWSSSRCLPERNQLAEKLLTYLPHHSFGKCLNNVGGLDMALSMYPECANDGSVTPKLWDHLHCALSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLANDPVAYAEYHAWRRCHTLGNYRMTRAASLDTLPCRVCDVVCRKGGRNA 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19135058 19138096 - Carg15825-RA Car04g02390 147815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02390 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 399 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02390 K14412 FUT13, FucTC; alpha-1,4-fucosyltransferase [EC:2.4.1.65] - csv:101216230 732.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02390 Car-Chr4:19135058 Car16g00318 Car-Chr16:1954005 6.92E-16 dispersed
Car15g00517 Car-Chr15:2801214 Car04g02390 Car-Chr4:19135058 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g01713 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.8 9.7e-154 540.8
Car13g00974 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 3.5e-151 532.3
Car01g00737 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 4.2e-149 525.4
Car04g01713 . 81 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.0 8.4e-163 570.9
Car13g00974 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 2.3e-160 562.8
Car01g00737 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 2.0e-156 549.7
Car04g01713 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 7.3e-137 484.6
Car13g00974 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.3e-133 473.8
Car19g00455 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Car16g00318 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 63.1 5.6e-183 637.9
Car15g00517 . 7 398 Xyloglucan Fucosyltransferase1 AT1G71990 68.2 2.5e-162 568.9
Car04g02390 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 67.1 7.5e-159 557.4
Car04g01713 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.4 1.6e-183 639.8
Car13g00974 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.7 4.3e-168 588.6
Car01g00737 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 2.6e-165 579.3
Car04g01713 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.8 5.9e-202 701.0
Car01g00737 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 6.9e-187 651.0
Car13g00974 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 65.1 5.0e-185 644.8
Car04g01713 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.3e-151 532.3
Car13g00974 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.5 1.2e-145 513.8
Car04g01713 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 9.1e-144 507.7
Car13g00974 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.3e-139 493.0
Car04g01713 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.8 4.2e-149 525.4
Car13g00974 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 52.1 3.5e-143 505.8
Car01g00737 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 9.4e-141 497.7
Car19g00455 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 2.5e-188 655.6
Car16g00318 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.9 3.2e-183 638.6
Car04g01713 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.4 1.6e-183 639.8
Car13g00974 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.7 4.3e-168 588.6
Car01g00737 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 2.6e-165 579.3
Car04g01713 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.8 5.9e-202 701.0
Car01g00737 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 6.9e-187 651.0
Car13g00974 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 65.1 5.0e-185 644.8
Car04g01713 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.4 1.6e-183 639.8
Car13g00974 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.7 4.3e-168 588.6
Car01g00737 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 2.6e-165 579.3
Car04g01713 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.8 4.2e-149 525.4
Car13g00974 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 52.1 3.5e-143 505.8
Car01g00737 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 9.4e-141 497.7
Car04g01713 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 9.1e-144 507.7
Car13g00974 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.3e-139 493.0
Car04g01713 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.8 9.7e-154 540.8
Car13g00974 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 3.5e-151 532.3
Car01g00737 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 4.2e-149 525.4
Car04g01713 . 81 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.0 8.4e-163 570.9
Car13g00974 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 2.3e-160 562.8
Car01g00737 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 2.0e-156 549.7
Car04g01713 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 7.3e-137 484.6
Car13g00974 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.3e-133 473.8
Car04g01713 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.3e-151 532.3
Car13g00974 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.5 1.2e-145 513.8
Car19g00455 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 2.5e-188 655.6
Car16g00318 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.9 3.2e-183 638.6
Car19g00455 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Car16g00318 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 63.1 5.6e-183 637.9
Car15g00517 . 7 398 Xyloglucan Fucosyltransferase1 AT1G71990 68.2 2.5e-162 568.9
Car04g02390 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 67.1 7.5e-159 557.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010578 1 1 1 1 1 1 2 1 1 0 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02390 Car_Chr04 FPKM 8.298904 10.759579 8.190614 8.389216 11.361393 11.662849 13.290564 10.389821 8.501973 8.625977