Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02391 ATGGAGAAGTTCCGTGTTTATTCCCTGTTGATCTTTCTTTTGGTTTTGAGTCTTTTTGTTCCAACTCTGTCTCTTCCGGTCGAGACTCGAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCTGTGGGTTTTCTTCATTCTTGGATTGATTCTGAATCCCCTTGTGGGTTCTCCGGTGTTACTTGCGACCGGTTTTCCGGGAGAGTTGTTGAGATTTCGTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCATCTATTTCTGTTCTGCAAAGTCTCACAACACTTTCATTGGCCTCAAACCACATTTCTGGGGTACTTCCTTATCAACTGATGAACTGTAGCAATCTTAAAGTACTGAATCTCACTGACAACGAAATGGTTGGGAGAATTCCTGATCTTTCTCAGCTGAGAAATTTGGAGGCTTTTGATCTATCTATCAACTTTTTCTCTGGTCAATTCCCATTCTGGGTTGGGAATTTAACTGGATTGGTGTCTCTTGGTCTAGGTGAAAATGAGTTTGAGACAGGTGAAATACCAGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTAGCCAATGCTTATTTGAGAGGAGAAATACCAGAGTCTCTATTTGAATTGAAGGCATTACAGACATTGGATCTTTCAAGGAACAAACTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGAAGAATCTGAATAAGCTTGAACTTTTTGTGAACCGTTTGACTGGAGAAATCCCACCAGAGATTTCGAACCTTACCCTTCTGCAAGAAATCGATATTTCGGCAAATAATTTCTACGGGGAGTTGCCTGAAGAGGTCGGGAACCTGAGGAATTTGGTGGTTTTTCAGTCGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCCGAATCTTACTGCATTTTCAATCTATAGGAACAACTTTTCTGGGGAATTTCCTGTGAATTTCGGCAGATTTGCGCCTCTCGACAGTATTGACATATCGGAGAACCAATTTTCAGGTGATTTCCCCAAGTTCTTGTGTGAGAATGGGAAGTTGCAGTTCTTACTTGCTCTGGAAAATAGATTTTCAGGTGAGCTTCCACTTTCTCTAGCTGAGTGCAAATCACTGCAAAGGTTCAGAATAAGTAACAATCAAATGTCAGGCAGGATTCCAGATGGGGTTTGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGACAATGAATTTACTGGAGTTATATCCCCAAACATTGCTTTATCAACTAGCTTGAGCCAATTGATTTTGCTAAACAATAAGTTTTCAGGTAAGCTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAAAGGCTTTACTTGAGTAACAATGACTTCAATGGAGAAATACCTTCTGAAATTGGTTTTCTCAGGCAACTTTCATCATTACACCTGGAAGTAAATTCTTTGAATGGATCAATCACACTGGAGATTGGGAATTGTGAAAGACTTGTGGACATAAATTTTGCTCACAACTCTCTTAGTGGCACTATTCCATCTTCATTTTCATTAATCAGCTCTTTGAACTCTCTGAATCTCTCAAGCAACAAACTTACAGGGATAATCCCGGAGTACTTGGAGAAAATGAAACTAAGTTCGATTGATTTGTCGGGTAATCAGCTCTTTGGAAGGGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTGTGTGTTGATGAAAACTACAGAGAAAGGATAAAAACAAGCCTGACTACTTGTACTGGAAAGCATAGTCAAAAAGGGGTGCTAGAGGATAAACTTGTATTTTTCAGTATCATAGTCTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTGTAATTACTTGAAGCGCAGTGAGACAGGCTCAGAGACCAGTCAGGAAGGGGATCAACAAGGAGCTCCAAAATGGAAAATTGCATCATTTCATCAAGTGGAAATTGATGCAGATGAAATAGGAAACTTTGAAGAAGACAATTTGATAGGGAGTGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAAAAACGGCAGTACGGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTGTTGGCAGCAGAAATGGAGATTTTGGGGAAGATAAGACATAGAAACATCTTGAAGCTCTATGCTTGCTTAATGAGAGAGGGATCTAGTTATCTAGTTTTTGATTACATGATTAATGGAAACCTGCGTGAAGCACTTCAAAAACAAATCAAAGGTGGGCAGCCTGAATTGGACTGGAACCAGAGGTACAGGATTGCCTTGGGGGCAGCAAGGGGAATTGCTTACTTGCATCATGATTGTTCACCGCCTATAATTCATAGAGATATAAAATCAACAAACATACTTCTAGATGGAGATTATGAACCAAAAATAGCTGATTTTGGAGTGGCAAAGGTTGCAGATCAGTTTCAAAGTGTTTCAGAGAACAGCTCTCTTGCTGGCACTCATGGTTATATTGCTCCTGAGCTAGCATATACTCCAAAAGTTTCAGAAAAGAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGCAGGAAAGCAATCGAAGATGAATATGGAGAAGGAAAAGATATTGTTTACTGGGTTTCAACACACCTCAATGAGCGTGATAATGTCCTCAAGCTTCTAGACGTTAAAGTTGCATCTGAAGTCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCATCGATGAGAGAGGTAGTGAAGATGCTATTAGACGCTGATCCTTACTCTTCTTCAATGCCCCTGAAAAACAGTTCAACTAAAAAACATTTCGTTTAG 2916 39.99 MEKFRVYSLLIFLLVLSLFVPTLSLPVETRALLRFKENLKDPVGFLHSWIDSESPCGFSGVTCDRFSGRVVEISLENKSLSGEISPSISVLQSLTTLSLASNHISGVLPYQLMNCSNLKVLNLTDNEMVGRIPDLSQLRNLEAFDLSINFFSGQFPFWVGNLTGLVSLGLGENEFETGEIPESIGNLKNLTWLYLANAYLRGEIPESLFELKALQTLDLSRNKLSGKLSKSISKLKNLNKLELFVNRLTGEIPPEISNLTLLQEIDISANNFYGELPEEVGNLRNLVVFQSYENNFSGKLPEGFGNMPNLTAFSIYRNNFSGEFPVNFGRFAPLDSIDISENQFSGDFPKFLCENGKLQFLLALENRFSGELPLSLAECKSLQRFRISNNQMSGRIPDGVWALPNAKMIDFSDNEFTGVISPNIALSTSLSQLILLNNKFSGKLPSELGKLTNLERLYLSNNDFNGEIPSEIGFLRQLSSLHLEVNSLNGSITLEIGNCERLVDINFAHNSLSGTIPSSFSLISSLNSLNLSSNKLTGIIPEYLEKMKLSSIDLSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERIKTSLTTCTGKHSQKGVLEDKLVFFSIIVSILVCVLAGLVLVSCNYLKRSETGSETSQEGDQQGAPKWKIASFHQVEIDADEIGNFEEDNLIGSGGTGKVYRLDLKKNGSTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFDYMINGNLREALQKQIKGGQPELDWNQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVAKVADQFQSVSENSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELITGRKAIEDEYGEGKDIVYWVSTHLNERDNVLKLLDVKVASEVVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLLDADPYSSSMPLKNSSTKKHFV 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19144042 19148330 + Carg15826-RA Car04g02391 147816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02391 971 ProSiteProfiles Leucine-rich repeat profile. 117 139 IPR001611 GO:0005515
Car04g02391 971 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Car04g02391 971 Pfam Protein kinase domain 677 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02391 971 Pfam Leucine Rich Repeat 453 475 IPR001611 GO:0005515
Car04g02391 971 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515
Car04g02391 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Car04g02391 971 ProSiteProfiles Leucine-rich repeat profile. 525 546 IPR001611 GO:0005515
Car04g02391 971 Pfam Leucine rich repeat 502 559 IPR001611 GO:0005515
Car04g02391 971 ProSiteProfiles Protein kinase domain profile. 677 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02391 971 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524
Car04g02391 971 Pfam Leucine Rich repeat 92 106 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02391 Car-Chr4:19144042 Car09g00542 Car-Chr9:3080351 0 dispersed
Car17g01290 Car-Chr17:9749524 Car04g02391 Car-Chr4:19144042 1.86E-47 dispersed
Car15g00514 Car-Chr15:2785649 Car04g02391 Car-Chr4:19144042 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88850 PF00069 Pkinase 1.00E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02391 - - csv:101215749 1633.62