Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02399 ATGGATTTCGGAAGTGAGGTTATTCCAATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCAAAATCTTGAATATTTTTCGGCTCCTTCTGGGGAGCAAGAGATGGGTCGGGAGCATGAAGGAGAGGCTACTTTGGAGGAAGATTATAGCGATGAAGAGCTGGATGTTGACGAGCTTGAGAGAAGGATGTGGCGTGATCGGATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGGGATGATAATTCAAAGCAGCGTCAATCCCAGGAGCAAGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGTATCCTGAAATATATGTTGAAAATGATGGAGGTTTGTAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAAGGAAAGCCAGTGAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAACGAGTCAGATTCGATAGAAATGGCCCAGCAGCCATTACCAAATATCAGGCTGATCATGCAATTCCTGGGATCAATGATGACTGCAATACAGTGACATCCACCCCCCACACTTTACAAGAGCTCCAAGATACAACCCTTGGATCACTTTTGTCTGCTCTGATGCAGCACTGTGATCCACCCCAGCGTCGTTTTCCATTAGAGAAGGGAGTTTCCCCACCGTGGTGGCCTACTGGAAACGAGGAATGGTGGCCTGAATTGGGATTACCCAAGGACCAGGGGCCTCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGTTTGGAAAGTTAGCGTTCTCACTGCTGTGATTAAGCACATGTCGCCCGACATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAATGTTTGCAAGACAAGATGACTGCAAAAGAGAGTGCTACATGGCTGGCCATTGTAAACCAGGAAGAAGCCTTGGCCAGGAAATTGTATCCTGATAGATGCCCACCTGTGTCGATCTGTGGGAGCGGATCTCTTTTAATCAGTGACAGTAGCGATTACAATGTTGAAGTAGTGAAAGACGAACCAAATGTCGAAACAGAGGAAAGGAAGCCTCATGATCTCAATTTCTTTAATATGGGGACTCCTGGACCTAGAGAGAGGCCAATGATGCCACCATTGGGACCTCAGATAAAGGAAGAACTCATGGAGAACAGTTCAAACTTTATTCAAAAGAGGACTCTGATTACTGATGAGTCAAATACAATGATGCCTCAGAAGATATATACTTGTGAATATTCTCAATGCCCATATAACAGCTCGCGCCTCGGGTTTCTCGACAGGACTTCGAGAAACAACCACCAGTTGAACTGCCCATTTAGGAGTGATTCTTCCCCAATATTTGGCATCCCAAACTTTCTAACTAACGATGATAAATCATCTCCAGTTCTTCCCTCCTTTAACCATTCCAAGCCTCCTACCCGGCCTATGAACCCAACTCCACCACTCAGAGTATCAGGCCTTGGACTTCCAGACGACGACCAGAAAATGATCACTGACCTTCTAAGTTTCTACGATTCTAACCATCAACAGGACAAGATTTTGAATTCCGGGAACGTCGAAGCAAGAGCCGACCACAACCAACAGCTGCCAAAATTCCAACTCCAAGTTGATGATAACTTGTATTGCCAAGGAGCAATGGTGGGGGGAAGTAGCATGCCAATGCAGCTCCCTGATTTCTCTTCCACAAAAGTCCCATTTGACGAATACAAGACGTTCGATTCTCCTTTCGGCATGTATCCTAACGATAACATTCCCGACTTCAGATTTGGTTCTCCCTTTAACTTGGCATCAATCGATTACCCAGTAGACCCACCGTTGCCAAAGCAAGATACACAATTGTGGTACCTTTGA 1863 45.73 MDFGSEVIPMMNTMGIFEDIGFCQNLEYFSAPSGEQEMGREHEGEATLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGDDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKERVRFDRNGPAAITKYQADHAIPGINDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKVWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDRCPPVSICGSGSLLISDSSDYNVEVVKDEPNVETEERKPHDLNFFNMGTPGPRERPMMPPLGPQIKEELMENSSNFIQKRTLITDESNTMMPQKIYTCEYSQCPYNSSRLGFLDRTSRNNHQLNCPFRSDSSPIFGIPNFLTNDDKSSPVLPSFNHSKPPTRPMNPTPPLRVSGLGLPDDDQKMITDLLSFYDSNHQQDKILNSGNVEARADHNQQLPKFQLQVDDNLYCQGAMVGGSSMPMQLPDFSSTKVPFDEYKTFDSPFGMYPNDNIPDFRFGSPFNLASIDYPVDPPLPKQDTQLWYL 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19172289 19175564 - Carg15834-RA Car04g02399 147824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02399 620 Pfam Ethylene insensitive 3 60 307 IPR006957 GO:0005634
Car04g02399 620 MobiDBLite consensus disorder prediction 78 104 - -
Car04g02399 620 MobiDBLite consensus disorder prediction 33 55 - -
Car04g02399 620 Coils Coil 45 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02399 K14514 EIN3; ethylene-insensitive protein 3 - csv:101214396 1030.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02399 Car-Chr4:19172289 Car10g00877 Car-Chr10:5251306 0 dispersed
Car15g00509 Car-Chr15:2772226 Car04g02399 Car-Chr4:19172289 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g853 . . . . . . . . . . . . . . . . . Bhi04g01650 . . . . . Lcy10g1635 . . . . . . . . . . . Lsi08g00615 Csa06g00461 . . . . . . . . . . . Cmo04g02607 . Cma04g02492 . Car04g02399 . . Cpe01g02155 . . . . . . . Cla08g00868 Cam08g1308 Cec08g0891 Cco08g1004 Clacu08g1013 . Cre08g0804 . . . Cme03g01109
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car10g00877 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 5.4e-190 661.4
Car15g00509 . 1 508 EIL Transcription Factor Family AT2G27050 59.7 6.8e-161 564.7
Car04g02399 . 17 533 EIL Transcription Factor Family AT2G27050 57.8 1.4e-158 557.0
Car11g00689 . 2 308 EIL Transcription Factor Family AT2G27050 83.5 1.7e-143 506.9
Car11g00714 . 66 366 EIL Transcription Factor Family AT2G27050 58.2 4.4e-91 332.8
Car11g00689 . 1 302 EIL Transcription Factor Family AT5G21120 54.5 2.9e-86 316.6
Car11g00714 . 73 327 EIL Transcription Factor Family AT5G21120 52.3 9.6e-74 275.0
Car11g00714 . 58 573 EIL Transcription Factor Family AT1G73730 53.5 8.0e-135 478.0
Car10g00877 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 7.3e-104 375.2
Car11g00689 . 36 301 EIL Transcription Factor Family AT1G73730 69.0 2.8e-103 373.2
Car04g02399 . 49 312 EIL Transcription Factor Family AT1G73730 67.7 4.9e-100 362.5
Car15g00509 . 40 335 EIL Transcription Factor Family AT1G73730 60.4 2.4e-99 360.1
Car16g00716 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 2.2e-76 283.9
Car04g00754 . 21 270 EIL Transcription Factor Family AT1G73730 54.9 2.7e-74 276.9
Car10g00877 . 3 619 EIL Transcription Factor Family AT3G20770 62.2 1.5e-206 716.5
Car04g02399 . 16 619 EIL Transcription Factor Family AT3G20770 51.2 1.1e-161 567.4
Car15g00509 . 7 512 EIL Transcription Factor Family AT3G20770 59.4 3.1e-159 559.3
Car11g00689 . 3 308 EIL Transcription Factor Family AT3G20770 84.8 7.6e-150 528.1
Car11g00714 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 7.3e-92 335.5
Car11g00689 . 44 296 EIL Transcription Factor Family AT5G65100 55.0 3.7e-79 293.1
Car11g00714 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 1.8e-70 264.2
Car16g00716 . 19 349 EIL Transcription Factor Family AT5G10120 59.4 1.1e-105 380.9
Car04g00754 . 18 355 EIL Transcription Factor Family AT5G10120 58.2 6.9e-103 371.7
Car11g00689 . 43 298 EIL Transcription Factor Family AT5G10120 58.5 7.9e-83 305.1
Car11g00714 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 4.8e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3456 PF04873 EIN3 7.50E-131 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02399 Car_Chr04 FPKM 3.005586 4.429162 1.179866 1.13721 2.848986 4.580729 4.472289 0.0 0.0 0.0