Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g02403 | ATGGGGATTCAAACGATGGGGTCTGAAGGCGGAGGTGATCCGAATGGCAAACAATCGCAATTGGAGCCATTGGTTCGACAAAACTCGATATACAGTCTCACTTTGGATGAGGTCCAAAACCAGTTGGGTGATCTAGGAAAGCCATTAATCAGTATGAATCTTGATGAGCTTCTTAAGAATGTGTGGACCGCTGAGGCTAACCAAAACGTCGGTAAGGACAATGAAGACAATACTGTTTTGTCGAACCTAACGCCCCAACAACGTCAGGGTAGTCTCACGTTGAATGGTGCTCTGAGTAAAAAGACGGTTGACGAGGTGTGGAGAGACATTCAACAAAGCAAAGATGGTGAGGAGAAGAAGTCTTGTGAACGACAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTTAAAGCCGGGGTCGTTGCTGAGACGTCACCGAATAAGAAAGGTGCAGGTCCTGTTGTTGAAGTCGACGCAAACATCACACCACAGTTCCCCCAACAAGGACAGTGGATGCAGTTCCCCCAAGTTCAATATCAGCCTCAACAAACAGCAATGATGGGGGTTTACATGCCGAGCCAACCTATTCCCCAGCCGATGCACGTCGGGGCTGGCACCGTGATGGATGGTCCATATGTAGACAATCAGTTGGCAATGCCAACGCCATTGATCGGAGCGTTATCTGACACACAGACATCTGGAAGGAAAAGGGGAGCGTCTGAAGACATGATCGAGAAAACTGTCGAGCGTAGACAGAAAAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCTTATACCAATGAACTGGAGAACAAAGTTTCGCGTTTGGAAGAGGAAAACGAAAGGCTCAGGAAACGAGCTGGAAAATTTGCTACCATCGACCCCCTCGCCCGAGCCGAAGTATCAGCTTCGAAGAACATCGTCAGCGCGGTTCTAACTTGGTGCTCGGCTTCTCGTCCTCATAAACTGTATGGTTGGTTCTTGATAGTTTGTTTGTAA | 1026 | 48.15 | MGIQTMGSEGGGDPNGKQSQLEPLVRQNSIYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQNVGKDNEDNTVLSNLTPQQRQGSLTLNGALSKKTVDEVWRDIQQSKDGEEKKSCERQPTLGEMTLEDFLVKAGVVAETSPNKKGAGPVVEVDANITPQFPQQGQWMQFPQVQYQPQQTAMMGVYMPSQPIPQPMHVGAGTVMDGPYVDNQLAMPTPLIGALSDTQTSGRKRGASEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRAGKFATIDPLARAEVSASKNIVSAVLTWCSASRPHKLYGWFLIVCL | 341 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19192285 | 19194734 | - | Carg15838-RA | Car04g02403 | 147828 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g02403 | 341 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Car04g02403 | 341 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 255 | 270 | IPR004827 | GO:0003700|GO:0006355 | |
| Car04g02403 | 341 | Coils | Coil | 268 | 295 | - | - | |
| Car04g02403 | 341 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 250 | 295 | IPR004827 | GO:0003700|GO:0006355 | |
| Car04g02403 | 341 | Pfam | bZIP transcription factor | 252 | 298 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02360 | Car-Chr4:18962141 | Car04g02403 | Car-Chr4:19192285 | 2.04E-21 | dispersed | |
| Car04g02403 | Car-Chr4:19192285 | Car04g02953 | Car-Chr4:22168537 | 2.24E-65 | dispersed | |
| Car09g00586 | Car-Chr9:3309179 | Car04g02403 | Car-Chr4:19192285 | 2.82E-12 | dispersed | |
| Car15g00550 | Car-Chr15:3026222 | Car04g02403 | Car-Chr4:19192285 | 4.32E-18 | dispersed | |
| Car15g00504 | Car-Chr15:2749471 | Car04g02403 | Car-Chr4:19192285 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3457 | PF00170 | bZIP_1 | 2.00E-14 | CL0018 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g02403 | K14432 | - | csv:101213915 | 488.419 |