Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02458 ATGTTTGCTGCCATTGCCATTCTGTTGTTCAGCTGGTTTTTGAGCTCCTCTCTGCCTTCTATGGCAGCTTTCAGTTTCAATCTCACTGACCCACATCTTCTTCCAGATCCTGAAACTGTTGCTTATGAAGTTCAGAGGAGTGTGAATGATTCATTTTCAAGAAGGGAAATGCTGTCGATTCATTCTAAAGGTCAATCGAATTCCTGTCAAACTGGAAACCCTATCGATGATTGTTGGCGCTGCGGTTCGAACTGGCAAGACAATCGCCAACGGCTTGCAGATTGCAGCATTGGATTTGGCCGAAACGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTTACAGATTCCTCCGACTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCTGTGGTTCAAGATGAACCTCTCTGGATCGTCTTTGCTGCAGACATGACTATCAAACTCAAGTACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGCGCAAATGTCCACATAACCGGCGGCGGTTGCATCACACTTCAGTACATCTCGAATGTAATCATCCACAACATCAACATTCATCACTGTATCCCTACCGGTCACACTAACGTCCGATCAAGCCCTACGCACGTCGGATACAGAGGAAAGTCCGACGGCGATGGAATCTCAATCTTCAGCTCGCGCAACATCTGGATCGATCATTGCTCCTTATCGTACTGTACCGACGGCTTAATCGACGCCATAATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTGGGGCATGAGGACGGCTATACGCCAGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTGGTTCAGCGGATGCCGCGGTGCCGGCGGGGTTATATACACGTGGTCAACAACGAGTTCCGATCGTGGGAGATGTACGCCATCGGCGGTAGCGGTGGTCCGACGATCAACAGCCAAGGGAATCGGTATATTGCGCCGGGGAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATTATGGTAAATGGCGCATTTTTTGTGCCGTCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCGAGTGTGGCGCCCAAATCCGCCGCTCTTGTCGACCAACTCACTCTCAACGCCGGCGTCTTCGGCGGGACCAGGGAGAGTAGACAGAGCAGCTCGTACCCTGGAGACGAGAGCTTTTCCAATTCCGGGTCCAGTGGCAGCGATGGCGGTGGTGACTACTTCGGGATGATATTCGGCGGGGGCGGTGTGAACAGTGCACTGCCACCATCTCTTTCAGTTGTTAACATGGTCGTTCTAACTCTGCTTACTATTTTAGTTCTGTACACAAACTCCATCTATGATGCTTTATTATCATTGACAGCATTGTAG 1485 51.45 MFAAIAILLFSWFLSSSLPSMAAFSFNLTDPHLLPDPETVAYEVQRSVNDSFSRREMLSIHSKGQSNSCQTGNPIDDCWRCGSNWQDNRQRLADCSIGFGRNAMGGKGGQIYIVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHEDGYTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDQLTLNAGVFGGTRESRQSSSYPGDESFSNSGSSGSDGGGDYFGMIFGGGGVNSALPPSLSVVNMVVLTLLTILVLYTNSIYDALLSLTAL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19559525 19562836 + Carg04587-RA Car04g02458 147883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02458 494 SUPERFAMILY Pectin lyase-like 73 412 IPR011050 -
Car04g02458 494 SMART amb_all 147 344 IPR002022 -
Car04g02458 494 Gene3D - 72 414 IPR012334 -
Car04g02458 494 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Car04g02458 494 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Car04g02458 494 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Car04g02458 494 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Car04g02458 494 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Car04g02458 494 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Car04g02458 494 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Car04g02458 494 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Car04g02458 494 PANTHER PECTATE LYASE 18-RELATED 5 432 IPR045032 GO:0030570
Car04g02458 494 MobiDBLite consensus disorder prediction 416 438 - -
Car04g02458 494 Pfam Pectate lyase 155 324 IPR002022 -
Car04g02458 494 PANTHER PECTATE LYASE 5 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02458 Car-Chr4:19559525 Car06g01087 Car-Chr6:8171712 0 dispersed
Car07g00883 Car-Chr7:4738589 Car04g02458 Car-Chr4:19559525 4.53E-120 dispersed
Car15g00460 Car-Chr15:2447824 Car04g02458 Car-Chr4:19559525 0 wgd
Car18g00831 Car-Chr18:9330760 Car04g02458 Car-Chr4:19559525 0 wgd
Car04g01467 Car-Chr4:8499852 Car04g02458 Car-Chr4:19559525 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02458 K01728 - csv:101207535 843.188