Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02480 ATGGGTGGTGTCGAAATACCCAAGTGGCTCAAAGGGTTGCCTTTGGCGCCGGAGTTTCGGCCGACTGATACCGAATTTGCCGATCCGATTGCTTACATATCTAAAATTGAGAAGGAAGCTAGTGCTTTTGGGATTTGTAAGATTATTCCTCCGTTTCCTAAGCCTTCCAAGAAATATGTCATTAGTAACTTGAACAAATCTCTTTCGAGATCCTCCGAGTTAAGCCGTGACTTAAATGCTTCAAATGTCCGTTCTTCATCCAAGTTGGGTTCTACAGATGGTGCAAACGAGAGAGAGGTTAGGGCAGTTTTTACGACTAGACACCAGGAATTGGGTCAGAGTGTTAGGAAAACGAAGGGGGTAGTTCAAAATCCGCAGTTTGGAGTTCACAAGCAAGTATGGCAAAGTGGTGAGGTTTATACATTGGAGCAATTCGAGTCCAAGTCGAAGGTTTTCGCTCGTAGTGTGTTAGGTGGGATTAAGGAGCCATCTCCTTTGGTTGTAGAATCATTGTTTTGGAAGGCAGCTACTGAGAAACCTATTTATGTGGAGTATGCAAATGATGTGCCGGGATCTGCTTTTGGAGAGCCAGAGGGTAAATTTCGTTATTTCCATAGGAGGAGGAGGAAGAGGAACTATTATAATCGTAAAGAACGGTCTTCTGAGCTTAAGAGTGGGGAAATGGAAACTTTGACAGAGACCCTCGCTCGGGATAGTCGAGGCACTTCCACCAGGGATAATCTGAATACAAGTGCAGAGATGTTGAAGCCATCTACTTCCACGGTTTCCTCAGAGGATGCTTCACACAACTCTAGAGGGAAGAGTTCAGATTCAGGTATTAATATGGAAGGGACGGCAGGCTGGAGGCTTTCAAATAGCCCTTGGAACTTGCAAGTAATTGCACGGTCACCTGGATCGCTTACGCGTTACATGCCTGATGACATTCCAGGTGTTACTTCTCCGATGGTTTACATTGGCATGTTGTTCAGTTGGTTTGCTTGGCATGTTGAAGATCATGAGCTGCATAGTATGAATTTTCTTCACGTAGGCTCTCCAAAAACTTGGTATTCCATTCCTGGAGATCATGCATTTGCTTTTGAGGAAGTTGTAAGAACTCAGGCTTATGGTGGCAGTGTCGACCACCTAGCTGCTCTTACATTACTGGGTGAGAAGACTTCTCTTCTATCTCCCGAGACAGTGATTGCAACTGGTATTCCTTGTTGCAGGTTAATCCAGAATCCAGGAGAATTTGTCGTCACCTTTCCAAGGGCTTACCACGTTGGGTTCAGTCATGGCTTTAACTGTGGGGAGGCAGCAAATTTTGGAACTCCACAATGGCTCAGCGTAGCCAAGGATGCTGCAGTGCGCAGAGCTGCAATGAACTACCTTCCCATGCTTTCTCATCAGCAACTCCTATACCTTTTAACGATGTCCTTTGTTTCAAGGTTTGTGTATCTTTTGTTGTTATGTTTATCTGATTGCTTGTTTGTCAAGCGATAA 1500 44.8 MGGVEIPKWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPFPKPSKKYVISNLNKSLSRSSELSRDLNASNVRSSSKLGSTDGANEREVRAVFTTRHQELGQSVRKTKGVVQNPQFGVHKQVWQSGEVYTLEQFESKSKVFARSVLGGIKEPSPLVVESLFWKAATEKPIYVEYANDVPGSAFGEPEGKFRYFHRRRRKRNYYNRKERSSELKSGEMETLTETLARDSRGTSTRDNLNTSAEMLKPSTSTVSSEDASHNSRGKSSDSGINMEGTAGWRLSNSPWNLQVIARSPGSLTRYMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHVGSPKTWYSIPGDHAFAFEEVVRTQAYGGSVDHLAALTLLGEKTSLLSPETVIATGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLSVAKDAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRFVYLLLLCLSDCLFVKR 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19717088 19720394 - Carg04565-RA Car04g02480 147905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02480 499 MobiDBLite consensus disorder prediction 235 283 - -
Car04g02480 499 Pfam JmjC domain, hydroxylase 322 441 IPR003347 -
Car04g02480 499 MobiDBLite consensus disorder prediction 79 99 - -
Car04g02480 499 ProSiteProfiles JmjC domain profile. 292 458 IPR003347 -
Car04g02480 499 MobiDBLite consensus disorder prediction 79 93 - -
Car04g02480 499 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Car04g02480 499 Pfam jmjN domain 17 50 IPR003349 -
Car04g02480 499 MobiDBLite consensus disorder prediction 215 234 - -
Car04g02480 499 MobiDBLite consensus disorder prediction 215 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02480 Car-Chr4:19717088 Car18g00201 Car-Chr18:1148147 6.25E-44 dispersed
Car13g00624 Car-Chr13:7926930 Car04g02480 Car-Chr4:19717088 1.32E-14 dispersed
Car15g00431 Car-Chr15:2257918 Car04g02480 Car-Chr4:19717088 3.11E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3462 PF02373 JmjC 2.80E-36 CL0029 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02480 - - csv:101206407 821.231