Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02491 ATGGCTAAGAATGCAGCGGAACGCGGCTCGTTCTCGGCGAAGGACTACCACGATCCACCACCGGCGCCGCTCATCGATGCCGTGGAGATTACGAAATGGTCGTTTTACAGAGCTCTGATTGCGGAGTTCATAGCCACTCTGCTTTTCCTGTACGTCACTGTGTTGACGGTGATCGGCTACAAATCGCAGACGGATCATATCGGCAACAAGAACGTTGATCCTTGCGGTGGCGTTGGGATTCTTGGCATTGCCTGGGCGTTTGGTGGAATGATCTTCGTTCTTGTTTACTGTACCGCTGGAATTTCAGGTGGGCACATAAATCCAGCAGTGACATTTGGGCTTTTGTTGGCCCGAAAGGTGTCACTTGTCCGGGCCGTGATGTACATGGTGGCCCAATGCTTAGGGGCCATTTGCGGAGTTGGGCTCGTGAAGTCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGTGGGGCAAATGGGCTCGCCGACGGCTACACCGTCGGCGTTGGACTGGCGGCGGAGATCGTGGGGACGTTTGTGTTGGTGTATACAGTCTTCTCTGCTACAGATCCCAAACGAAGCGCAAGAGATTCCCACGTTCCTGTTTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATAGTTCACCTGGCCACCATTCCAGTCACTGGCACTGGAATCAACCCTGCAAGGAGCTTGGGATCTGCTGTTATTTTCAACCACCAAAACACTTGGAATAATCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCTTTCTACCACCAATTCATCTTGCGAGCAGGTGCTGTGAAGGCTCTTGGTTCATTTAGAAGCAACCCAAATGTGTGA 864 52.31 MAKNAAERGSFSAKDYHDPPPAPLIDAVEITKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDHIGNKNVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAICGVGLVKSFQKAHFQKYGGGANGLADGYTVGVGLAAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPVTGTGINPARSLGSAVIFNHQNTWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19784872 19787586 + Carg04554-RA Car04g02491 147916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02491 287 CDD MIP 37 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Car04g02491 287 SUPERFAMILY Aquaporin-like 29 271 IPR023271 -
Car04g02491 287 TIGRFAM MIP: MIP family channel proteins 41 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 PANTHER AQUAPORIN PIP2-1 6 284 - -
Car04g02491 287 Pfam Major intrinsic protein 29 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car04g02491 287 Gene3D Glycerol uptake facilitator protein. 22 287 IPR023271 -
Car04g02491 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 284 IPR034294 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01446 Car04g02491 CCT
Car04g01446 Car04g02491 ECH
Car04g02491 Car04g01446 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01114 Car-Chr3:9045777 Car04g02491 Car-Chr4:19784872 6.16E-169 dispersed
Car04g02491 Car-Chr4:19784872 Car16g00627 Car-Chr16:4005989 3.66E-153 dispersed
Car20g00676 Car-Chr20:3804975 Car04g02491 Car-Chr4:19784872 1.79E-20 dispersed
Car04g01446 Car-Chr4:8395801 Car04g02491 Car-Chr4:19784872 2.22E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02491 K09872 - twl:119980357 500.745