Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g02506 | ATGGGGAAGAAGGGAGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCAGAATCAAAGGATAAGAAAGATCAGAAAGCTAACAAAACAAAGAAAAGATGGTTTGGGAAGCCAATGAAATTGGAGACAGTGGCATCTGGGGAGCCAGCGCCATTGGAAGTGTCTATTCTACCTATTGAGGAAGTGAAACTAGCTAATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCGGAGGTGGCGGTTGCAGCGGCTCAGGCCGCCGCCGAGGTCGTTAGACTCACCACCCGCCCTTGGTACTCCGGGAAATCTAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGCGGCTATATGGCTAGGAGGGCCCTGCGAGCATTAAGAGGGTTAGTGAGGCTGAAGTCATTGATACAAGGCCAATCTGTTAAAAGGCAAGCAACATCCACATTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGCTAGAAGACTTAGATTGTCGGAGGAGAATCAGGCTCTTCAGAGACAGCTCCAACAAAAACATGAAAGAGAGCTCGAGAGATTAACTGGTTCTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCTTATGCTTTCTCTCATCAGAAGTTATGGAATAATTCTTCAAAAGCTGCAAATCCTACGTTCATGGACCCCAACAATCCCCACTGGGGATGGAGTTGGTTAGAGCGATGGATGGCTGCTCGTCCATGGGAGACCAAAAGCACCGTCGATTACCACGATCGTGGCTCTGTCAAGAGCGCGATCAGCCATGCCACGTCAATTGGAGACATCGCCAAAGCTTACGCCCGTCGAGATTTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCGACGAGCCATAATACGAGCCGTGCACCAAGTCGCCAATCGCCGGCGACTCCGACGAAGGCGCAATCGTCGCTATCTGCAGGAAGAAAATTGAAGTCCAGCAAGTCCAAGAGGATTAGGCTGGGGCGGAGACGACGATTCCAGAAGCGGATTGAGCGTCAAATCTGA | 1149 | 49.35 | MGKKGGWFSAVKKAFAPESKDKKDQKANKTKKRWFGKPMKLETVASGEPAPLEVSILPIEEVKLANAENEQSKHAYSVAIATAVAAEVAVAAAQAAAEVVRLTTRPWYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATSTLRCMQTLARVQSQIRARRLRLSEENQALQRQLQQKHERELERLTGSANNEWDDSTKSKEQVEARLVNRQEAATRRERALAYAFSHQKLWNNSSKAANPTFMDPNNPHWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDFNLDIKPFPRTPTSHNTSRAPSRQSPATPTKAQSSLSAGRKLKSSKSKRIRLGRRRRFQKRIERQI | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19885272 | 19888555 | + | Carg04539-RA | Car04g02506 | 147931 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g02506 | 382 | Coils | Coil | 170 | 197 | - | - | |
| Car04g02506 | 382 | Pfam | IQ calmodulin-binding motif | 117 | 135 | IPR000048 | GO:0005515 | |
| Car04g02506 | 382 | MobiDBLite | consensus disorder prediction | 320 | 382 | - | - | |
| Car04g02506 | 382 | MobiDBLite | consensus disorder prediction | 358 | 382 | - | - | |
| Car04g02506 | 382 | MobiDBLite | consensus disorder prediction | 325 | 357 | - | - | |
| Car04g02506 | 382 | ProSiteProfiles | IQ motif profile. | 114 | 142 | IPR000048 | GO:0005515 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g02506 | Car18g00808 | CCT | |
| Car04g01432 | Car04g02506 | CCT | |
| Car04g02506 | Car18g00808 | ECH | |
| Car04g02506 | Car04g01432 | ECH | |
| Car04g01432 | Car04g02506 | ECH | |
| Car04g02506 | Car15g00406 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02506 | Car-Chr4:19885272 | Car07g00918 | Car-Chr7:5109008 | 3.68E-96 | dispersed | |
| Car06g00117 | Car-Chr6:753567 | Car04g02506 | Car-Chr4:19885272 | 3.48E-18 | dispersed | |
| Car08g00167 | Car-Chr8:1020766 | Car04g02506 | Car-Chr4:19885272 | 3.11E-38 | dispersed | |
| Car15g00778 | Car-Chr15:4408467 | Car04g02506 | Car-Chr4:19885272 | 2.15E-28 | dispersed | |
| Car16g00041 | Car-Chr16:296993 | Car04g02506 | Car-Chr4:19885272 | 2.92E-39 | dispersed | |
| Car16g00380 | Car-Chr16:2341810 | Car04g02506 | Car-Chr4:19885272 | 7.11E-33 | dispersed | |
| Car17g00469 | Car-Chr17:3354633 | Car04g02506 | Car-Chr4:19885272 | 3.10E-37 | dispersed | |
| Car17g00673 | Car-Chr17:6223892 | Car04g02506 | Car-Chr4:19885272 | 1.70E-28 | dispersed | |
| Car18g01244 | Car-Chr18:11856862 | Car04g02506 | Car-Chr4:19885272 | 5.44E-32 | dispersed | |
| Car19g00691 | Car-Chr19:8031765 | Car04g02506 | Car-Chr4:19885272 | 8.76E-18 | dispersed | |
| Car15g00406 | Car-Chr15:2112389 | Car04g02506 | Car-Chr4:19885272 | 0 | wgd | |
| Car18g00808 | Car-Chr18:9145038 | Car04g02506 | Car-Chr4:19885272 | 4.21E-71 | wgd | |
| Car04g01432 | Car-Chr4:8297663 | Car04g02506 | Car-Chr4:19885272 | 5.98E-80 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g02506 | - | - | cmax:111487231 | 630.943 |